Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX92807 | Canola | nucleus | 84.18 | 85.11 |
| CDY46689 | Canola | nucleus | 84.62 | 83.15 |
| Bra019094.1-P | Field mustard | nucleus | 84.62 | 83.15 |
| CDX94301 | Canola | nucleus | 80.44 | 82.81 |
| Bra026413.1-P | Field mustard | nucleus | 76.48 | 82.27 |
| CDX89316 | Canola | endoplasmic reticulum | 79.56 | 80.98 |
| CDY46690 | Canola | nucleus | 75.16 | 79.91 |
| AT5G55550.10 | Thale cress | nucleus | 74.29 | 66.67 |
| KRH14284 | Soybean | nucleus | 58.46 | 55.65 |
| VIT_19s0090g01660.t01 | Wine grape | nucleus | 58.02 | 55.23 |
| KRG98573 | Soybean | nucleus | 58.02 | 55.11 |
| KRH73860 | Soybean | nucleus | 57.58 | 54.93 |
| KRH46297 | Soybean | nucleus | 57.8 | 54.91 |
| PGSC0003DMT400037271 | Potato | nucleus | 56.04 | 54.26 |
| Solyc10g006050.2.1 | Tomato | nucleus | 50.33 | 52.89 |
| GSMUA_Achr10P... | Banana | nucleus | 53.19 | 52.61 |
| PGSC0003DMT400076643 | Potato | nucleus | 54.51 | 52.32 |
| GSMUA_Achr10P... | Banana | nucleus | 50.55 | 52.27 |
| GSMUA_Achr6P10970_001 | Banana | nucleus | 54.95 | 50.0 |
| Solyc12g014600.1.1 | Tomato | nucleus | 47.91 | 49.89 |
| Os11t0637700-01 | Rice | plasma membrane | 50.99 | 49.68 |
| TraesCS4A01G150600.1 | Wheat | nucleus | 50.55 | 49.68 |
| HORVU0Hr1G008280.1 | Barley | nucleus | 50.55 | 49.68 |
| TraesCS4D01G152200.1 | Wheat | nucleus | 50.33 | 49.46 |
| TraesCSU01G068500.1 | Wheat | nucleus | 50.33 | 49.46 |
| GSMUA_Achr4P33100_001 | Banana | nucleus | 47.69 | 49.09 |
| Zm00001d019079_P001 | Maize | cytosol | 46.59 | 47.32 |
| EER97452 | Sorghum | nucleus | 48.57 | 46.92 |
| Os07t0584500-01 | Rice | nucleus | 48.57 | 46.82 |
| TraesCS2B01G216600.2 | Wheat | cytosol | 48.35 | 46.71 |
| TraesCS2D01G197500.2 | Wheat | nucleus | 48.13 | 46.6 |
| Zm00001d007772_P001 | Maize | nucleus | 45.93 | 46.55 |
| EER96020 | Sorghum | nucleus | 46.15 | 46.15 |
| EER98147 | Sorghum | nucleus | 45.93 | 46.14 |
| AT3G07810.2 | Thale cress | nucleus | 49.89 | 45.86 |
| Zm00001d019084_P002 | Maize | nucleus | 45.71 | 45.81 |
| Zm00001d006704_P002 | Maize | nucleus | 47.91 | 45.04 |
| AT5G47620.4 | Thale cress | cytoskeleton, cytosol, nucleus | 41.32 | 41.5 |
| TraesCS2A01G190400.1 | Wheat | plastid | 48.35 | 41.43 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 48.35 | 40.67 |
| Zm00001d019086_P001 | Maize | nucleus | 46.59 | 39.85 |
| OQU83904 | Sorghum | nucleus | 38.46 | 38.89 |
| AT2G33410.1 | Thale cress | nucleus | 32.53 | 36.63 |
| AT4G14300.1 | Thale cress | nucleus | 32.09 | 35.52 |
| GSMUA_Achr3P02300_001 | Banana | nucleus | 52.09 | 34.9 |
| AT3G13224.2 | Thale cress | nucleus | 24.62 | 31.28 |
| AT5G53720.1 | Thale cress | cytosol | 6.81 | 31.0 |
| AT1G17640.1 | Thale cress | nucleus | 24.4 | 30.08 |
| AT1G58470.2 | Thale cress | cytosol, nucleus, plastid | 23.3 | 29.44 |
| AT5G40490.1 | Thale cress | nucleus | 25.93 | 27.9 |
| AT4G36960.2 | Thale cress | cytosol | 19.34 | 23.22 |
| AT1G33470.1 | Thale cress | cytosol | 10.55 | 19.59 |
| AT5G53680.1 | Thale cress | cytosol | 7.03 | 18.93 |
| AT3G54770.1 | Thale cress | nucleus | 10.55 | 18.39 |
| AT1G20880.1 | Thale cress | nucleus | 10.77 | 17.88 |
| AT5G11412.1 | Thale cress | endoplasmic reticulum | 6.81 | 17.71 |
| AT3G15010.2 | Thale cress | nucleus | 15.6 | 17.57 |
| AT1G76460.1 | Thale cress | nucleus | 10.99 | 17.54 |
| AT2G46780.1 | Thale cress | nucleus | 10.77 | 14.58 |
| AT1G78260.1 | Thale cress | nucleus | 9.01 | 14.29 |
| AT3G56860.10 | Thale cress | nucleus | 14.95 | 14.23 |
| AT1G22910.3 | Thale cress | nucleus | 10.77 | 14.12 |
| AT1G22330.1 | Thale cress | nucleus | 9.01 | 14.09 |
| AT2G41060.3 | Thale cress | nucleus | 13.85 | 13.97 |
| AT3G06970.1 | Thale cress | nucleus | 9.45 | 13.56 |
| AT2G22100.1 | Thale cress | nucleus | 10.77 | 12.83 |
| AT2G22090.2 | Thale cress | nucleus | 9.67 | 12.68 |
| AT2G19380.1 | Thale cress | nucleus | 8.35 | 6.2 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:828772 | ProteinID:AEE85232.1 | EMBL:AF419605 | ArrayExpress:AT4G26650 |
| EnsemblPlantsGene:AT4G26650 | RefSeq:AT4G26650 | TAIR:AT4G26650 | RefSeq:AT4G26650-TAIR-G | EnsemblPlants:AT4G26650.1 | TAIR:AT4G26650.1 |
| EMBL:AY097345 | Unigene:At.20416 | InterPro:DAZAP1_RRM2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003729 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | RefSeq:NP_567753.1 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PFscan:PS50102 | PANTHER:PTHR44291 | PANTHER:PTHR44291:SF1 | UniProt:Q8W569 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI00000A90DC | SEG:seg | : | : |
Description
AT4g26650/T15N24_100 [Source:UniProtKB/TrEMBL;Acc:Q8W569]
Coordinates
chr4:+:13444797..13448212
Molecular Weight (calculated)
49399.7 Da
IEP (calculated)
6.690
GRAVY (calculated)
-0.657
Length
455 amino acids
Sequence
(BLAST)
(BLAST)
001: MNPEEQKMES ASDLGKLFIG GISWDTDEER LQEYFGKYGD LVEAVIMRDR TTGRARGFGF IVFADPSVAE RVIMDKHIID GRTVEAKKAV PRDDQQVLKR
101: HASPMHLISP SHGGNGGGAR TKKIFVGGLP SSITEAEFKN YFDQFGTIAD VVVMYDHNTQ RPRGFGFITF DSEESVDMVL HKTFHELNGK MVEVKRAVPK
201: ELSSTTPNRS PLIGYGNNYG VVPNRSSANS YFNSFPPGYN NNNLGSAGRF SPIGSGRNAF SSFGLGLNQE LNLNSNFDGN TLGYSRIPGN QYFNSASPNR
301: YNSPIGYNRG DSAYNPSNRD LWGNRSDSSG PGWNLGVSVG NNRGNWGLSS VVSDNNGYGR SYGAGSGLSG LSFAGNTNGF DGSIGELYRG SSVYSDSTWQ
401: QSMPHHQSSN ELDGLSRSYG FGIDNVGSDP SANASEGYSG NYNVGNRQTH RGIEA
101: HASPMHLISP SHGGNGGGAR TKKIFVGGLP SSITEAEFKN YFDQFGTIAD VVVMYDHNTQ RPRGFGFITF DSEESVDMVL HKTFHELNGK MVEVKRAVPK
201: ELSSTTPNRS PLIGYGNNYG VVPNRSSANS YFNSFPPGYN NNNLGSAGRF SPIGSGRNAF SSFGLGLNQE LNLNSNFDGN TLGYSRIPGN QYFNSASPNR
301: YNSPIGYNRG DSAYNPSNRD LWGNRSDSSG PGWNLGVSVG NNRGNWGLSS VVSDNNGYGR SYGAGSGLSG LSFAGNTNGF DGSIGELYRG SSVYSDSTWQ
401: QSMPHHQSSN ELDGLSRSYG FGIDNVGSDP SANASEGYSG NYNVGNRQTH RGIEA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.