Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra031385.1-P | Field mustard | nucleus | 86.25 | 86.55 |
| CDY21356 | Canola | nucleus | 85.91 | 86.21 |
| CDY46642 | Canola | nucleus | 82.47 | 83.05 |
| Bra012321.1-P | Field mustard | nucleus | 82.13 | 82.7 |
| AT1G78260.1 | Thale cress | nucleus | 73.54 | 74.56 |
| CDY00446 | Canola | nucleus | 75.94 | 65.0 |
| VIT_18s0001g05840.t01 | Wine grape | nucleus | 52.92 | 55.8 |
| KRH16743 | Soybean | nucleus | 52.23 | 55.47 |
| KRH18921 | Soybean | nucleus | 52.58 | 55.43 |
| Solyc04g074310.2.1 | Tomato | nucleus | 52.58 | 52.22 |
| AT5G53720.1 | Thale cress | cytosol | 16.84 | 49.0 |
| KRH62327 | Soybean | nucleus | 47.77 | 48.43 |
| KRH53044 | Soybean | nucleus | 46.05 | 46.69 |
| AT1G76460.1 | Thale cress | nucleus | 36.77 | 37.54 |
| AT1G20880.1 | Thale cress | nucleus | 34.36 | 36.5 |
| AT1G33470.1 | Thale cress | cytosol | 29.55 | 35.1 |
| AT3G54770.1 | Thale cress | nucleus | 30.24 | 33.72 |
| AT2G46780.1 | Thale cress | nucleus | 36.43 | 31.55 |
| AT5G53680.1 | Thale cress | cytosol | 17.87 | 30.77 |
| AT5G11412.1 | Thale cress | endoplasmic reticulum | 17.53 | 29.14 |
| AT1G22910.3 | Thale cress | nucleus | 28.52 | 23.92 |
| AT3G06970.1 | Thale cress | nucleus | 18.56 | 17.03 |
| AT2G22090.2 | Thale cress | nucleus | 16.84 | 14.12 |
| AT3G15010.2 | Thale cress | nucleus | 19.59 | 14.11 |
| AT1G17640.1 | Thale cress | nucleus | 17.18 | 13.55 |
| AT5G47620.4 | Thale cress | cytoskeleton, cytosol, nucleus | 18.56 | 11.92 |
| AT2G33410.1 | Thale cress | nucleus | 16.49 | 11.88 |
| AT4G14300.1 | Thale cress | nucleus | 16.49 | 11.68 |
| AT2G41060.3 | Thale cress | nucleus | 17.87 | 11.53 |
| AT3G13224.2 | Thale cress | nucleus | 14.09 | 11.45 |
| AT5G40490.1 | Thale cress | nucleus | 16.15 | 11.11 |
| AT3G56860.10 | Thale cress | nucleus | 18.21 | 11.09 |
| AT1G58470.2 | Thale cress | cytosol, nucleus, plastid | 13.4 | 10.83 |
| AT3G07810.2 | Thale cress | nucleus | 17.87 | 10.51 |
| AT4G36960.2 | Thale cress | cytosol | 13.4 | 10.29 |
| AT2G22100.1 | Thale cress | nucleus | 12.03 | 9.16 |
| AT4G26650.1 | Thale cress | nucleus | 14.09 | 9.01 |
| AT5G55550.10 | Thale cress | nucleus | 14.43 | 8.28 |
| AT2G19380.1 | Thale cress | nucleus | 12.03 | 5.71 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:838839 | ProteinID:AAF87259.1 | ProteinID:AEE30230.1 | ArrayExpress:AT1G22330 |
| EnsemblPlantsGene:AT1G22330 | RefSeq:AT1G22330 | TAIR:AT1G22330 | RefSeq:AT1G22330-TAIR-G | EnsemblPlants:AT1G22330.1 | TAIR:AT1G22330.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0008150 | InterPro:IPR000504 |
| InterPro:IPR012677 | RefSeq:NP_564168.2 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50102 | PANTHER:PTHR44828 | PANTHER:PTHR44828:SF3 | UniProt:Q9LME7 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI00000A5688 | SEG:seg |
Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LME7]
Coordinates
chr1:+:7886323..7889534
Molecular Weight (calculated)
31982.4 Da
IEP (calculated)
6.602
GRAVY (calculated)
-0.891
Length
291 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNTSYYRSP FGDTTHTKVF VGGLAWETPT DEMRRYFDQF GEILEAVIIT DKATGKSKGY GFVTFRDSDS ATRAVADPNP VIDGRKANCN IASFGRPRPS
101: TPRGRGQGGS PSQYQGGGQS SYTGMAAPVQ QAAAAQLMYP SYGYTYNSEY GYHQALYNAQ LQQAQYYQQQ MYGGGGATSP SSSNIMPSPY YYLQAPSPRP
201: YLHHQQHYQY HHHQQQQQQQ QQRLPSASSY LIYPSNVEAP TPSNVPTSQG PLSSSTESHA PQQVSEEGGE FDPTDAPEST TTNIRDLTSS S
101: TPRGRGQGGS PSQYQGGGQS SYTGMAAPVQ QAAAAQLMYP SYGYTYNSEY GYHQALYNAQ LQQAQYYQQQ MYGGGGATSP SSSNIMPSPY YYLQAPSPRP
201: YLHHQQHYQY HHHQQQQQQQ QQRLPSASSY LIYPSNVEAP TPSNVPTSQG PLSSSTESHA PQQVSEEGGE FDPTDAPEST TTNIRDLTSS S
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.