Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 2
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH16743 | Soybean | nucleus | 72.83 | 73.36 |
| KRH18921 | Soybean | nucleus | 72.83 | 72.83 |
| Solyc04g074310.2.1 | Tomato | nucleus | 69.2 | 65.19 |
| KRH62327 | Soybean | nucleus | 67.75 | 65.16 |
| KRH53044 | Soybean | nucleus | 65.94 | 63.41 |
| AT1G78260.1 | Thale cress | nucleus | 58.7 | 56.45 |
| CDX68024 | Canola | nucleus | 55.43 | 54.06 |
| CDX87460 | Canola | nucleus | 55.8 | 54.04 |
| Bra003651.1-P | Field mustard | nucleus | 52.9 | 53.87 |
| CDX88432 | Canola | nucleus | 55.43 | 53.87 |
| AT1G22330.1 | Thale cress | nucleus | 55.8 | 52.92 |
| CDX79253 | Canola | nucleus | 53.62 | 52.86 |
| Bra031385.1-P | Field mustard | nucleus | 55.07 | 52.41 |
| CDY21356 | Canola | nucleus | 54.71 | 52.07 |
| CDY46642 | Canola | nucleus | 54.35 | 51.9 |
| Bra012321.1-P | Field mustard | nucleus | 54.35 | 51.9 |
| VIT_18s0122g00660.t01 | Wine grape | nucleus, plastid | 46.01 | 44.56 |
| CDY00446 | Canola | nucleus | 52.17 | 42.35 |
| VIT_18s0089g00920.t01 | Wine grape | nucleus | 36.96 | 37.92 |
| VIT_13s0019g03610.t01 | Wine grape | nucleus | 33.7 | 37.65 |
| VIT_15s0048g02630.t01 | Wine grape | nucleus | 34.78 | 35.96 |
| VIT_16s0098g01050.t01 | Wine grape | endoplasmic reticulum, extracellular | 27.54 | 26.12 |
| VIT_08s0007g06300.t01 | Wine grape | nucleus | 21.01 | 16.96 |
| VIT_18s0117g00150.t01 | Wine grape | nucleus | 21.01 | 16.16 |
| VIT_12s0057g01280.t01 | Wine grape | nucleus | 14.86 | 15.89 |
| VIT_19s0015g00920.t01 | Wine grape | nucleus | 19.57 | 15.52 |
| VIT_19s0014g01570.t01 | Wine grape | nucleus | 24.28 | 14.92 |
| VIT_14s0066g00480.t01 | Wine grape | nucleus | 20.29 | 14.89 |
| VIT_09s0002g02350.t01 | Wine grape | cytosol | 18.12 | 14.16 |
| VIT_07s0031g01290.t01 | Wine grape | nucleus | 18.48 | 13.01 |
| VIT_12s0057g00480.t01 | Wine grape | nucleus | 22.1 | 12.76 |
| VIT_05s0049g01660.t01 | Wine grape | nucleus | 21.38 | 12.72 |
| VIT_07s0031g00600.t01 | Wine grape | cytosol | 16.3 | 12.53 |
| VIT_19s0090g01660.t01 | Wine grape | nucleus | 20.65 | 11.92 |
| VIT_08s0056g00690.t01 | Wine grape | nucleus | 19.93 | 11.88 |
| VIT_06s0009g01190.t01 | Wine grape | nucleus | 19.57 | 11.82 |
| VIT_07s0005g03980.t01 | Wine grape | nucleus | 18.48 | 11.75 |
| VIT_06s0009g01180.t01 | Wine grape | mitochondrion, nucleus, plastid | 19.93 | 10.62 |
| VIT_18s0001g08640.t01 | Wine grape | nucleus | 14.49 | 8.49 |
Protein Annotations
| EntrezGene:100253997 | wikigene:100253997 | Gene3D:3.30.70.330 | MapMan:35.1 | ProteinID:CBI19171 | ProteinID:CBI19171.3 |
| UniProt:E0CRL7 | EMBL:FN595227 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | EntrezGene:LOC100253997 | wikigene:LOC100253997 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PFscan:PS50102 | PANTHER:PTHR44828 | PANTHER:PTHR44828:SF3 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI0001BE14FE | ArrayExpress:VIT_18s0001g05840 | EnsemblPlantsGene:VIT_18s0001g05840 | EnsemblPlants:VIT_18s0001g05840.t01 | unigene:Vvi.22752 |
| RefSeq:XP_003634414 | RefSeq:XP_003634414.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr18:+:4520619..4529938
Molecular Weight (calculated)
30091.8 Da
IEP (calculated)
8.521
GRAVY (calculated)
-0.750
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYQHYRSPF GDTTFTKVFV GGLAWETPTD VMRRHFEQFG EILEAVIITD KNTGKSKGYG FVTFRDPESA RRACVDPNPV IDGRRANCNI ASLGRPRPSP
101: PRGRNQGGNP YHAGASQGAS SFSGVPAPLA PPPPPPPPPP PPPPVIYPPY GYATYTPDYG YHQQSLYNPQ LQQPYYHQLY GASSSTVASP YYYGYSLQAS
201: RGTFSGPQAH RVQGPSYLYY PTQMEGSFPT YPPPPVPPTL QPTSRPPFPS STDSQTVQQS STETEAGVSH SESPTT
101: PRGRNQGGNP YHAGASQGAS SFSGVPAPLA PPPPPPPPPP PPPPVIYPPY GYATYTPDYG YHQQSLYNPQ LQQPYYHQLY GASSSTVASP YYYGYSLQAS
201: RGTFSGPQAH RVQGPSYLYY PTQMEGSFPT YPPPPVPPTL QPTSRPPFPS STDSQTVQQS STETEAGVSH SESPTT
001: MSNTSYYRSP FGDTTHTKVF VGGLAWETPT DEMRRYFDQF GEILEAVIIT DKATGKSKGY GFVTFRDSDS ATRAVADPNP VIDGRKANCN IASFGRPRPS
101: TPRGRGQGGS PSQYQGGGQS SYTGMAAPVQ QAAAAQLMYP SYGYTYNSEY GYHQALYNAQ LQQAQYYQQQ MYGGGGATSP SSSNIMPSPY YYLQAPSPRP
201: YLHHQQHYQY HHHQQQQQQQ QQRLPSASSY LIYPSNVEAP TPSNVPTSQG PLSSSTESHA PQQVSEEGGE FDPTDAPEST TTNIRDLTSS S
101: TPRGRGQGGS PSQYQGGGQS SYTGMAAPVQ QAAAAQLMYP SYGYTYNSEY GYHQALYNAQ LQQAQYYQQQ MYGGGGATSP SSSNIMPSPY YYLQAPSPRP
201: YLHHQQHYQY HHHQQQQQQQ QQRLPSASSY LIYPSNVEAP TPSNVPTSQG PLSSSTESHA PQQVSEEGGE FDPTDAPEST TTNIRDLTSS S
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LME7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.