Factsheet for VIT_08s0007g06300.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67043	Soybean	nucleus	68.71	69.12
KRG95365	Soybean	nucleus	67.84	69.05
GSMUA_Achr9P12410_001	Banana	nucleus	65.5	66.87
VIT_19s0014g01570.t01	Wine grape	nucleus	39.47	30.07
VIT_07s0031g01290.t01	Wine grape	nucleus	30.12	26.28
VIT_08s0056g00690.t01	Wine grape	nucleus	32.16	23.76
VIT_18s0122g00660.t01	Wine grape	nucleus, plastid	19.01	22.81
VIT_06s0009g01190.t01	Wine grape	nucleus	29.24	21.88
VIT_13s0019g03610.t01	Wine grape	nucleus	15.2	21.05
VIT_18s0001g05840.t01	Wine grape	nucleus	16.96	21.01
VIT_06s0009g01180.t01	Wine grape	mitochondrion, nucleus, plastid	30.7	20.27
VIT_12s0057g01280.t01	Wine grape	nucleus	15.2	20.16
VIT_18s0089g00920.t01	Wine grape	nucleus	15.79	20.07
VIT_15s0048g02630.t01	Wine grape	nucleus	15.2	19.48
VIT_19s0015g00920.t01	Wine grape	nucleus	19.3	18.97
VIT_18s0117g00150.t01	Wine grape	nucleus	19.59	18.66
VIT_14s0066g00480.t01	Wine grape	nucleus	20.47	18.62
VIT_09s0002g02350.t01	Wine grape	cytosol	18.13	17.56
VIT_07s0005g03980.t01	Wine grape	nucleus	19.3	15.21
VIT_12s0057g00480.t01	Wine grape	nucleus	21.05	15.06
VIT_19s0090g01660.t01	Wine grape	nucleus	20.47	14.64
VIT_05s0049g01660.t01	Wine grape	nucleus	19.59	14.44
VIT_16s0098g01050.t01	Wine grape	endoplasmic reticulum, extracellular	12.28	14.43
VIT_18s0001g08640.t01	Wine grape	nucleus	17.84	12.95
VIT_07s0031g00600.t01	Wine grape	cytosol	13.45	12.81

Protein Annotations

EntrezGene:100243489	wikigene:100243489	Gene3D:3.30.70.330	MapMan:35.1	ProteinID:CBI30033	ProteinID:CBI30033.3
UniProt:D7TIF7	EMBL:FN595991	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	EntrezGene:LOC100243489	wikigene:LOC100243489	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR44678	PANTHER:PTHR44678:SF2	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	TIGR:TC62660	UniParc:UPI0001BE360A	ArrayExpress:VIT_08s0007g06300	EnsemblPlantsGene:VIT_08s0007g06300	EnsemblPlants:VIT_08s0007g06300.t01
unigene:Vvi.9648	RefSeq:XP_002278602	RefSeq:XP_002278602.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:-:20073250..20078033

Molecular Weight (calculated)

36506.5 Da

IEP (calculated)

8.026

GRAVY (calculated)

-0.301

Length

342 amino acids

Sequence
(BLAST)

001: MEDLKKRKLE EASNGQISSS PEELKLLLDP LSKSQLVDLL SKLGSQYPSI AEEIKSVASA DPVHRKLFVR GLAWNTTSET LCAAFRLHGE IEEGAVIVDK
101: TTGKSRGYGF ITYKHMESTQ SALQAPSKLI DGRMAVCNLA CEGLSGASTT PDQAQRKLYI GGLAPDVTSE VLLSFFGRHG EIEEGSVAYD KETNESRGFG
201: FVTYKTVEAA KKAIDDPQKF LGGRSIIVKL ADSHKGKMIQ AQLSTAVVPI ALPLAAGYPQ QPGKPPASAT PVAYTYPQAG ATYPAYPGPP TGPAPYSSTA
301: PAPYPSQPQM PYSSATVMKD PLGLPPTPTV GMGGYPYYFA KQ

Best Arabidopsis Sequence Match ( AT2G41060.1 )
(BLAST)

001: MTKKRKLESE SNETSEPTEK QQQQCEKEDP EIRNVDNQRD DDEQVVEQDT LKEMHEEEAK GEDNIEAETS SGSGNQGNED DDEEEPIEDL LEPFSKDQLL
101: ILLKEAAERH RDVANRIRIV ADEDLVHRKI FVHGLGWDTK ADSLIDAFKQ YGEIEDCKCV VDKVSGQSKG YGFILFKSRS GARNALKQPQ KKIGTRMTAC
201: QLASIGPVQG NPVVAPAQHF NPENVQRKIY VSNVSADIDP QKLLEFFSRF GEIEEGPLGL DKATGRPKGF ALFVYRSLES AKKALEEPHK TFEGHVLHCH
301: KANDGPKQVK QHQHNHNSHN QNSRYQRNDN NGYGAPGGHG HFIAGNNQAV QAFNPAIGQA LTALLASQGA GLGLNQAFGQ ALLGTLGTAS PGAVGGMPSG
401: YGTQANISPG VYPGYGAQAG YQGGYQTQQP GQGGAGRGQH GAGYGGPYMG R

Arabidopsis Description

UBA2BUBP1-associated protein 2B [Source:UniProtKB/Swiss-Prot;Acc:O80678]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.