Factsheet for VIT_19s0090g01660.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH46297	Soybean	nucleus	75.1	74.95
KRG98573	Soybean	nucleus	74.06	73.9
KRH73860	Soybean	nucleus	72.59	72.75
VIT_12s0057g00480.t01	Wine grape	nucleus	72.18	72.18
KRH14284	Soybean	nucleus	72.18	72.18
PGSC0003DMT400037271	Potato	nucleus	70.5	71.7
PGSC0003DMT400076643	Potato	nucleus	69.87	70.46
Solyc12g014600.1.1	Tomato	nucleus	63.6	69.57
Solyc10g006050.2.1	Tomato	nucleus	62.97	69.52
GSMUA_Achr10P...	Banana	nucleus	62.55	67.95
GSMUA_Achr10P...	Banana	nucleus	62.34	64.78
Os11t0637700-01	Rice	plasma membrane	62.13	63.6
TraesCSU01G068500.1	Wheat	nucleus	61.09	63.07
TraesCS4D01G152200.1	Wheat	nucleus	61.09	63.07
TraesCS4A01G150600.1	Wheat	nucleus	61.09	63.07
HORVU0Hr1G008280.1	Barley	nucleus	60.88	62.85
GSMUA_Achr4P33100_001	Banana	nucleus	57.95	62.67
GSMUA_Achr6P10970_001	Banana	nucleus	65.27	62.4
Bra028973.1-P	Field mustard	nucleus	52.93	58.43
AT4G26650.1	Thale cress	nucleus	55.23	58.02
CDY11989	Canola	nucleus	52.3	57.87
Os07t0584500-01	Rice	nucleus	56.9	57.63
EER97452	Sorghum	nucleus	56.49	57.32
TraesCS2B01G216600.2	Wheat	cytosol	56.28	57.11
TraesCS2D01G197500.2	Wheat	nucleus	56.07	57.02
CDX94301	Canola	nucleus	52.72	57.01
EER98147	Sorghum	nucleus	53.77	56.73
Zm00001d007772_P001	Maize	nucleus	53.14	56.57
CDY36753	Canola	nucleus	51.46	56.55
EER96020	Sorghum	nucleus	53.77	56.48
CDX92807	Canola	nucleus	52.72	56.0
Zm00001d019079_P001	Maize	cytosol	52.3	55.8
Bra026413.1-P	Field mustard	nucleus	48.95	55.32
CDY46689	Canola	nucleus	53.14	54.86
Bra019094.1-P	Field mustard	nucleus	53.14	54.86
Zm00001d019084_P002	Maize	nucleus	52.09	54.85
CDX89316	Canola	endoplasmic reticulum	51.26	54.81
Zm00001d006704_P002	Maize	nucleus	55.02	54.34
CDY46690	Canola	nucleus	47.91	53.5
AT5G55550.10	Thale cress	nucleus	54.18	51.08
TraesCS2A01G190400.1	Wheat	plastid	55.65	50.09
OQU83904	Sorghum	nucleus	46.23	49.11
Zm00001d021950_P007	Maize	endoplasmic reticulum, nucleus	55.23	48.8
Zm00001d019086_P001	Maize	nucleus	53.56	48.12
VIT_07s0005g03980.t01	Wine grape	nucleus	40.38	44.47
GSMUA_Achr3P02300_001	Banana	nucleus	62.13	43.74
VIT_05s0049g01660.t01	Wine grape	nucleus	42.05	43.32
VIT_19s0015g00920.t01	Wine grape	nucleus	28.24	38.79
VIT_18s0117g00150.t01	Wine grape	nucleus	28.24	37.6
VIT_14s0066g00480.t01	Wine grape	nucleus	28.66	36.44
VIT_09s0002g02350.t01	Wine grape	cytosol	26.36	35.69
VIT_12s0057g01280.t01	Wine grape	nucleus	18.41	34.11
VIT_07s0031g00600.t01	Wine grape	cytosol	23.43	31.2
VIT_18s0089g00920.t01	Wine grape	nucleus	14.64	26.02
VIT_18s0001g08640.t01	Wine grape	nucleus	24.9	25.27
VIT_18s0122g00660.t01	Wine grape	nucleus, plastid	13.18	22.11
VIT_15s0048g02630.t01	Wine grape	nucleus	11.92	21.35
VIT_13s0019g03610.t01	Wine grape	nucleus	10.88	21.05
VIT_18s0001g05840.t01	Wine grape	nucleus	11.92	20.65
VIT_19s0014g01570.t01	Wine grape	nucleus	19.25	20.49
VIT_08s0007g06300.t01	Wine grape	nucleus	14.64	20.47
VIT_06s0009g01190.t01	Wine grape	nucleus	16.11	16.85
VIT_08s0056g00690.t01	Wine grape	nucleus	15.48	15.98
VIT_07s0031g01290.t01	Wine grape	nucleus	12.55	15.31
VIT_06s0009g01180.t01	Wine grape	mitochondrion, nucleus, plastid	15.69	14.48
VIT_16s0098g01050.t01	Wine grape	endoplasmic reticulum, extracellular	7.53	12.37

Protein Annotations

EntrezGene:100267443	wikigene:100267443	Gene3D:3.30.70.330	MapMan:35.1	EMBL:AM479280	ProteinID:CAN75218
ProteinID:CAN75218.1	ProteinID:CCB50721	ProteinID:CCB50721.1	InterPro:DAZAP1_RRM2	UniProt:F6HEM8	EMBL:FN595751
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
EntrezGene:LOC100267443	wikigene:LOC100267443	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44291
PANTHER:PTHR44291:SF1	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	TIGR:TC67771
UniParc:UPI00019855DF	ArrayExpress:VIT_19s0090g01660	EnsemblPlantsGene:VIT_19s0090g01660	EnsemblPlants:VIT_19s0090g01660.t01	unigene:Vvi.4596	RefSeq:XP_002274589
RefSeq:XP_002274589.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr19:-:7716772..7721485

Molecular Weight (calculated)

50703.2 Da

IEP (calculated)

7.837

GRAVY (calculated)

-0.562

Length

478 amino acids

Sequence
(BLAST)

001: MESDLGKLFI GGISWDTDED RLKEYFRTYG EVVEAVIMRD RTTGRARGFG FVVFADPAVA ERVVMDKHMI DGRTVEAKKA VPRDDQHLLN RNTGSIHGSP
101: GPGRTKKIFV GGLASTVTES DFKKYFDQFG TINDVVVMYD HNTQRPRGFG FITYDSEEAV ERVLHKTFHE LNGKMVEVKR AVPKEHSPGP SRSPLVGYNY
201: GLGRNNNFLN NYGQGYNMSS VGSYGIRMDG RFNPVASGRS GFPPFGAPGY GMGMNLEQGL SPSYSGNSSF SNNPGYGRIL NPYYSGNSNR YSTPIGYNAG
301: NGRSDSVLNS TPRNVWGNGS LNNATNPASP GAYLGSGGGN FGVSFGNGGA NWGSSPIPAQ GGGSALGFTS GSLNYGSGDS SYGLGGGGYG RNSSTGVAAA
401: SSFAPSTGGY EGSYEELYRS GSVYNDSTWR TPTSELDGPG SFSYGLGNAA SDVTANSAED YIGSYSVANR QSNRGIAA

Best Arabidopsis Sequence Match ( AT3G07810.1 )
(BLAST)

001: MQSDNGKLFI GGISWDTNEE RLKEYFSSFG EVIEAVILKD RTTGRARGFG FVVFADPAVA EIVITEKHNI DGRLVEAKKA VPRDDQNMVN RSNSSSIQGS
101: PGGPGRTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP GPSRSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PAAVGGYGLR MDGRFSPVGA GRSGFANYSS GYGMNVNFDQ GLPTGFTGGT NYNGNVDYGR GMSPYYIGNT NRFGPAVGYE
301: GGNGGGNSSF FSSVTRNLWG NNGGLNYNNN NTNSNSNTYM GGSSSGNNTL SGPFGNSGVN WGAPGGGNNA VSNENVKFGY GGNGESGFGL GTGGYAARNP
401: GANKAAPSSS FSSASATNNT GYDTAGLAEF YGNGAVYSDP TWRSPTPETE GPAPFSYGIG GGVPSSDVSA RSSSPGYVGS YSVNKRQPNR GIAT

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JFN7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.