Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER97452 | Sorghum | nucleus | 93.18 | 95.75 |
| Os07t0584500-01 | Rice | nucleus | 83.68 | 85.81 |
| TraesCS2B01G216600.2 | Wheat | cytosol | 82.23 | 84.5 |
| TraesCS2D01G197500.2 | Wheat | nucleus | 81.61 | 84.04 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 93.8 | 83.92 |
| Zm00001d007772_P001 | Maize | nucleus | 76.24 | 82.18 |
| Zm00001d019079_P001 | Maize | cytosol | 75.83 | 81.92 |
| Zm00001d019084_P002 | Maize | nucleus | 72.93 | 77.75 |
| TraesCS2A01G190400.1 | Wheat | plastid | 81.61 | 74.39 |
| Zm00001d019086_P001 | Maize | nucleus | 77.07 | 70.11 |
| Solyc04g014820.2.1 | Tomato | cytosol | 33.06 | 59.7 |
| GSMUA_Achr10P... | Banana | nucleus | 53.31 | 58.64 |
| KRH14098 | Soybean | nucleus | 57.02 | 57.62 |
| GSMUA_Achr10P... | Banana | nucleus | 54.55 | 57.39 |
| KRH74025 | Soybean | nucleus | 55.79 | 56.84 |
| VIT_12s0057g00480.t01 | Wine grape | nucleus | 55.58 | 56.28 |
| PGSC0003DMT400037271 | Potato | nucleus | 54.13 | 55.74 |
| GSMUA_Achr4P33100_001 | Banana | nucleus | 50.41 | 55.2 |
| VIT_19s0090g01660.t01 | Wine grape | nucleus | 54.34 | 55.02 |
| Solyc07g048030.2.1 | Tomato | nucleus | 49.59 | 54.92 |
| PGSC0003DMT400076643 | Potato | nucleus | 53.72 | 54.85 |
| Solyc10g006050.2.1 | Tomato | nucleus | 48.55 | 54.27 |
| PGSC0003DMT400074192 | Potato | nucleus | 52.48 | 53.59 |
| Solyc12g014600.1.1 | Tomato | nucleus | 48.35 | 53.55 |
| KRG98573 | Soybean | nucleus | 52.69 | 53.24 |
| KRH46297 | Soybean | nucleus | 52.27 | 52.82 |
| KRH73860 | Soybean | nucleus | 51.65 | 52.41 |
| GSMUA_Achr6P10970_001 | Banana | nucleus | 53.93 | 52.2 |
| Solyc12g006180.1.1 | Tomato | nucleus | 47.11 | 52.05 |
| KRH14284 | Soybean | nucleus | 51.24 | 51.88 |
| PGSC0003DMT400034757 | Potato | nucleus | 49.79 | 51.5 |
| Solyc11g012470.1.1 | Tomato | nucleus | 44.42 | 50.23 |
| PGSC0003DMT400060554 | Potato | nucleus | 48.55 | 50.0 |
| CDY07975 | Canola | nucleus | 47.93 | 49.26 |
| CDX74030 | Canola | nucleus | 47.73 | 48.94 |
| Bra001267.1-P | Field mustard | nucleus | 47.52 | 48.83 |
| CDY22136 | Canola | nucleus | 48.35 | 48.15 |
| Bra040031.1-P | Field mustard | nucleus | 48.35 | 48.15 |
| AT4G26650.1 | Thale cress | nucleus | 45.04 | 47.91 |
| AT3G07810.2 | Thale cress | nucleus | 48.97 | 47.88 |
| CDY66272 | Canola | nucleus | 48.14 | 47.65 |
| CDY35966 | Canola | nucleus | 48.55 | 47.57 |
| CDX94301 | Canola | nucleus | 43.39 | 47.51 |
| CDY36753 | Canola | nucleus | 42.56 | 47.36 |
| Bra029681.1-P | Field mustard | nucleus | 48.97 | 47.31 |
| Bra028973.1-P | Field mustard | nucleus | 42.15 | 47.11 |
| CDY11989 | Canola | nucleus | 41.53 | 46.53 |
| CDX92807 | Canola | nucleus | 42.98 | 46.22 |
| CDY50131 | Canola | nucleus | 36.36 | 46.07 |
| CDX89316 | Canola | endoplasmic reticulum | 42.36 | 45.86 |
| Bra021062.1-P | Field mustard | nucleus | 36.98 | 45.66 |
| Bra026413.1-P | Field mustard | nucleus | 39.88 | 45.63 |
| Bra024928.1-P | Field mustard | nucleus | 39.46 | 45.48 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 38.84 | 45.3 |
| Bra019094.1-P | Field mustard | nucleus | 43.18 | 45.14 |
| CDY46689 | Canola | nucleus | 43.18 | 45.14 |
| CDY46690 | Canola | nucleus | 39.88 | 45.09 |
| Bra017475.1-P | Field mustard | nucleus | 39.67 | 44.96 |
| CDY41059 | Canola | nucleus | 39.67 | 44.96 |
| CDX77783 | Canola | nucleus | 39.46 | 44.94 |
| AT5G47620.4 | Thale cress | cytoskeleton, cytosol, nucleus | 41.32 | 44.15 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 36.98 | 43.55 |
| Bra022145.1-P | Field mustard | nucleus | 40.7 | 42.83 |
| AT5G55550.10 | Thale cress | nucleus | 43.39 | 41.42 |
| CDY28918 | Canola | mitochondrion | 41.12 | 41.12 |
| GSMUA_Achr3P02300_001 | Banana | nucleus | 55.37 | 39.47 |
| Zm00001d032739_P001 | Maize | nucleus | 33.88 | 37.02 |
| CDX75170 | Canola | extracellular | 12.19 | 36.2 |
| Zm00001d034200_P001 | Maize | nucleus | 12.4 | 35.09 |
| CDY25957 | Canola | nucleus | 39.88 | 34.9 |
| Zm00001d014058_P002 | Maize | plastid | 34.5 | 34.65 |
| Zm00001d030579_P001 | Maize | mitochondrion | 23.55 | 32.76 |
| Zm00001d034201_P001 | Maize | nucleus | 15.91 | 30.68 |
| CDY40554 | Canola | nucleus | 40.7 | 30.03 |
| Zm00001d007839_P001 | Maize | cytosol | 22.73 | 29.73 |
| Zm00001d016349_P002 | Maize | nucleus | 23.14 | 29.17 |
| Zm00001d018730_P001 | Maize | nucleus | 22.11 | 28.61 |
| Zm00001d052820_P001 | Maize | extracellular, mitochondrion, plasma membrane | 22.11 | 27.94 |
| Zm00001d011885_P008 | Maize | cytosol | 20.25 | 27.22 |
| Zm00001d036966_P001 | Maize | nucleus, plasma membrane | 22.93 | 26.88 |
| Zm00001d046190_P001 | Maize | extracellular | 22.93 | 26.55 |
| Zm00001d052212_P001 | Maize | nucleus | 8.68 | 26.09 |
| Zm00001d053572_P002 | Maize | cytosol | 23.76 | 20.95 |
| Zm00001d042641_P001 | Maize | nucleus | 12.6 | 20.68 |
| Zm00001d042133_P003 | Maize | cytosol | 15.29 | 18.59 |
| Zm00001d044469_P003 | Maize | nucleus | 16.94 | 18.34 |
| Zm00001d011336_P002 | Maize | nucleus | 16.94 | 18.3 |
| Zm00001d036789_P001 | Maize | cytosol, mitochondrion, nucleus | 10.54 | 18.28 |
| Zm00001d012238_P003 | Maize | nucleus, plasma membrane, plastid | 12.81 | 18.24 |
| Zm00001d028714_P001 | Maize | cytosol, nucleus, plasma membrane | 11.16 | 18.18 |
| Zm00001d047753_P001 | Maize | cytosol, mitochondrion, nucleus | 10.33 | 17.92 |
| Zm00001d042042_P001 | Maize | nucleus | 12.19 | 17.35 |
| Zm00001d040344_P001 | Maize | extracellular, plasma membrane | 15.7 | 16.74 |
| Zm00001d018103_P002 | Maize | plasma membrane | 10.95 | 16.67 |
| Zm00001d037209_P001 | Maize | plastid | 10.74 | 15.66 |
| Zm00001d017829_P002 | Maize | plastid | 10.95 | 15.36 |
| Zm00001d046716_P001 | Maize | nucleus | 10.54 | 14.17 |
| Zm00001d051627_P002 | Maize | plastid | 10.54 | 13.86 |
| Zm00001d002141_P006 | Maize | nucleus | 14.88 | 13.82 |
| Zm00001d026397_P001 | Maize | nucleus, plasma membrane | 14.67 | 13.63 |
Protein Annotations
| EntrezGene:103647784 | Gene3D:3.30.70.330 | MapMan:35.1 | UniProt:A0A1D6EZQ5 | InterPro:DAZAP1_RRM2 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf |
| ProteinID:ONM24751.1 | ProteinID:ONM24756.1 | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44291 | PANTHER:PTHR44291:SF4 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0008429D68 | EnsemblPlantsGene:Zm00001d006704 |
| EnsemblPlants:Zm00001d006704_P002 | EnsemblPlants:Zm00001d006704_T002 | SEG:seg | : | : | : |
Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Coordinates
chr2:+:214784265..214790976
Molecular Weight (calculated)
52231.5 Da
IEP (calculated)
6.525
GRAVY (calculated)
-0.502
Length
484 amino acids
Sequence
(BLAST)
(BLAST)
001: MEADSGKLFV GGISWETDED RLREYFGRFG DVTEAVIMRD RNTGRARGFG FVVFADSGIA ERVTMEKHMI DGRMVEAKKA VPRDDQSIAS KNNSSIGSPG
101: PGRTRKIFVG GLASNVTEVE FRRYFEQFGV ITDVVVMYDH NTQRPRGFGF ITYDSEDAVD KALHKNFHEL NGKMVEVKRA VPKEQSPGPI ARSPAGGQNY
201: AMSRVHNFLN GFNQGYNPNP LGGYGMRVDA RYGLLAGARN GFSSFGPGYG MGMSVEGGMR GYFGASSGFV NSSNGRQIGS YFNGSSNRLG SPIGYVGLND
301: DSGSILSSMS RNVWGNGNLN YIGNHTNMNS FPQPGSGGGI SGDEISWGSL TSAHGMSNIS SLGSGNLGRG TGDNNFGLPS GNYVRSNSTG TIGEPFSASA
401: NAYESNNPGA YGSSSIYGDS TWRFNSSEVD MPPFGHDLGN DDPDIKSEIS ASYMGNYTVN NNQTSRGQLL FQYCAMIYTW FSFF
101: PGRTRKIFVG GLASNVTEVE FRRYFEQFGV ITDVVVMYDH NTQRPRGFGF ITYDSEDAVD KALHKNFHEL NGKMVEVKRA VPKEQSPGPI ARSPAGGQNY
201: AMSRVHNFLN GFNQGYNPNP LGGYGMRVDA RYGLLAGARN GFSSFGPGYG MGMSVEGGMR GYFGASSGFV NSSNGRQIGS YFNGSSNRLG SPIGYVGLND
301: DSGSILSSMS RNVWGNGNLN YIGNHTNMNS FPQPGSGGGI SGDEISWGSL TSAHGMSNIS SLGSGNLGRG TGDNNFGLPS GNYVRSNSTG TIGEPFSASA
401: NAYESNNPGA YGSSSIYGDS TWRFNSSEVD MPPFGHDLGN DDPDIKSEIS ASYMGNYTVN NNQTSRGQLL FQYCAMIYTW FSFF
001: MQSDNGKLFI GGISWDTNEE RLKEYFSSFG EVIEAVILKD RTTGRARGFG FVVFADPAVA EIVITEKHNI DGRLVEAKKA VPRDDQNMVN RSNSSSIQGS
101: PGGPGRTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP GPSRSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PAAVGGYGLR MDGRFSPVGA GRSGFANYSS GYGMNVNFDQ GLPTGFTGGT NYNGNVDYGR GMSPYYIGNT NRFGPAVGYE
301: GGNGGGNSSF FSSVTRNLWG NNGGLNYNNN NTNSNSNTYM GGSSSGNNTL SGPFGNSGVN WGAPGGGNNA VSNENVKFGY GGNGESGFGL GTGGYAARNP
401: GANKAAPSSS FSSASATNNT GYDTAGLAEF YGNGAVYSDP TWRSPTPETE GPAPFSYGIG GGVPSSDVSA RSSSPGYVGS YSVNKRQPNR GEPSR
101: PGGPGRTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP GPSRSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PAAVGGYGLR MDGRFSPVGA GRSGFANYSS GYGMNVNFDQ GLPTGFTGGT NYNGNVDYGR GMSPYYIGNT NRFGPAVGYE
301: GGNGGGNSSF FSSVTRNLWG NNGGLNYNNN NTNSNSNTYM GGSSSGNNTL SGPFGNSGVN WGAPGGGNNA VSNENVKFGY GGNGESGFGL GTGGYAARNP
401: GANKAAPSSS FSSASATNNT GYDTAGLAEF YGNGAVYSDP TWRSPTPETE GPAPFSYGIG GGVPSSDVSA RSSSPGYVGS YSVNKRQPNR GEPSR
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JFN7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.