Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra021062.1-P | Field mustard | nucleus | 46.63 | 19.39 |
| CDY50131 | Canola | nucleus | 45.4 | 19.37 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 46.01 | 18.25 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 32.52 | 15.32 |
| CDY41059 | Canola | nucleus | 39.88 | 15.22 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 38.65 | 15.18 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 10.43 | 15.18 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 33.13 | 14.88 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 33.13 | 14.84 |
| CDX77783 | Canola | nucleus | 38.65 | 14.82 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 32.52 | 14.6 |
| GSMUA_Achr4P33100_001 | Banana | nucleus | 38.65 | 14.25 |
| AT5G47620.4 | Thale cress | cytoskeleton, cytosol, nucleus | 39.26 | 14.13 |
| GSMUA_Achr10P... | Banana | nucleus | 38.04 | 14.09 |
| Zm00001d019079_P001 | Maize | cytosol | 38.65 | 14.06 |
| CDY46690 | Canola | nucleus | 36.81 | 14.02 |
| CDY51790 | Canola | cytosol | 9.2 | 14.02 |
| CDY36753 | Canola | nucleus | 36.81 | 13.79 |
| Os11t0637700-01 | Rice | plasma membrane | 39.26 | 13.7 |
| CDY11989 | Canola | nucleus | 36.2 | 13.66 |
| HORVU0Hr1G008280.1 | Barley | nucleus | 38.65 | 13.61 |
| TraesCS4A01G150600.1 | Wheat | nucleus | 38.65 | 13.61 |
| TraesCS4D01G152200.1 | Wheat | nucleus | 38.65 | 13.61 |
| TraesCSU01G068500.1 | Wheat | nucleus | 38.65 | 13.61 |
| GSMUA_Achr10P... | Banana | nucleus | 38.04 | 13.48 |
| CDY26229 | Canola | nucleus | 30.67 | 13.48 |
| EER98147 | Sorghum | nucleus | 37.42 | 13.47 |
| CDY48318 | Canola | nucleus | 30.67 | 13.44 |
| EER96020 | Sorghum | nucleus | 37.42 | 13.41 |
| TraesCS2D01G197500.2 | Wheat | nucleus | 38.65 | 13.4 |
| TraesCS2B01G216600.2 | Wheat | cytosol | 38.65 | 13.38 |
| Zm00001d007772_P001 | Maize | nucleus | 36.81 | 13.36 |
| CDX94301 | Canola | nucleus | 36.2 | 13.35 |
| CDX92807 | Canola | nucleus | 36.81 | 13.33 |
| CDX69279 | Canola | nucleus | 19.02 | 13.14 |
| CDY12068 | Canola | nucleus | 28.83 | 13.13 |
| CDY28918 | Canola | mitochondrion | 38.65 | 13.02 |
| CDX89316 | Canola | endoplasmic reticulum | 35.58 | 12.98 |
| CDY46689 | Canola | nucleus | 36.81 | 12.96 |
| Os07t0584500-01 | Rice | nucleus | 37.42 | 12.92 |
| GSMUA_Achr6P10970_001 | Banana | nucleus | 39.26 | 12.8 |
| CDY07975 | Canola | nucleus | 36.81 | 12.74 |
| EER97452 | Sorghum | nucleus | 36.81 | 12.74 |
| CDX74030 | Canola | nucleus | 36.81 | 12.71 |
| CDY24201 | Canola | nucleus | 28.22 | 12.71 |
| CDY43360 | Canola | nucleus | 28.22 | 12.71 |
| CDY66272 | Canola | nucleus | 38.04 | 12.68 |
| OQU83904 | Sorghum | nucleus | 34.97 | 12.67 |
| Zm00001d019084_P002 | Maize | nucleus | 34.97 | 12.56 |
| CDY35966 | Canola | nucleus | 37.42 | 12.35 |
| CDY22136 | Canola | nucleus | 36.81 | 12.35 |
| CDX90262 | Canola | nucleus | 28.83 | 12.3 |
| Zm00001d006704_P002 | Maize | nucleus | 36.2 | 12.19 |
| TraesCS2A01G190400.1 | Wheat | plastid | 38.65 | 11.86 |
| CDY25957 | Canola | nucleus | 39.88 | 11.75 |
| CDY23739 | Canola | nucleus | 27.61 | 11.75 |
| CDY17173 | Canola | nucleus | 26.99 | 11.67 |
| CDY67299 | Canola | nucleus | 26.99 | 11.55 |
| Zm00001d019086_P001 | Maize | nucleus | 37.42 | 11.47 |
| CDY42724 | Canola | cytosol | 25.77 | 11.08 |
| CDY69852 | Canola | cytosol | 25.77 | 10.99 |
| CDX79527 | Canola | nucleus | 26.99 | 10.84 |
| CDX84689 | Canola | nucleus | 26.99 | 10.78 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 35.58 | 10.72 |
| CDY02889 | Canola | nucleus | 12.88 | 9.68 |
| CDY40554 | Canola | nucleus | 38.04 | 9.45 |
| GSMUA_Achr3P02300_001 | Banana | nucleus | 36.81 | 8.84 |
| CDY55846 | Canola | nucleus | 21.47 | 8.73 |
| CDY25867 | Canola | nucleus | 21.47 | 8.64 |
| CDX78261 | Canola | nucleus | 13.5 | 8.49 |
| CDY42577 | Canola | nucleus | 28.22 | 8.44 |
| CDX73451 | Canola | cytosol | 12.88 | 8.4 |
| CDY37724 | Canola | nucleus | 16.56 | 8.36 |
| CDY26001 | Canola | nucleus | 20.86 | 8.35 |
| CDY36357 | Canola | nucleus | 27.61 | 8.3 |
| CDY24106 | Canola | nucleus | 20.86 | 8.23 |
| CDY64698 | Canola | nucleus | 12.88 | 8.05 |
| CDY27186 | Canola | nucleus | 20.86 | 7.57 |
| CDX72106 | Canola | nucleus | 20.86 | 7.47 |
| CDY31859 | Canola | nucleus | 11.04 | 7.47 |
| CDX76015 | Canola | nucleus | 13.5 | 7.21 |
| CDY04769 | Canola | nucleus | 10.43 | 7.17 |
| CDX79253 | Canola | nucleus | 12.27 | 7.14 |
| CDX88283 | Canola | nucleus | 12.27 | 7.14 |
| CDX96615 | Canola | nucleus | 11.04 | 7.14 |
| CDY69197 | Canola | nucleus | 9.82 | 7.11 |
| CDX88432 | Canola | nucleus | 12.27 | 7.04 |
| CDX87460 | Canola | nucleus | 12.27 | 7.02 |
| CDY06947 | Canola | nucleus | 18.4 | 6.98 |
| CDY21356 | Canola | nucleus | 12.27 | 6.9 |
| CDY29496 | Canola | nucleus | 11.04 | 6.9 |
| CDY25759 | Canola | nucleus | 10.43 | 6.83 |
| CDY31508 | Canola | nucleus | 10.43 | 6.8 |
| CDY57580 | Canola | nucleus | 18.4 | 6.77 |
| CDY33653 | Canola | nucleus | 10.43 | 6.72 |
| CDX68024 | Canola | nucleus | 11.66 | 6.71 |
| CDY01349 | Canola | nucleus | 9.82 | 6.64 |
| CDX73279 | Canola | cytosol | 9.82 | 6.61 |
| CDX69277 | Canola | mitochondrion | 7.36 | 6.45 |
| CDX87594 | Canola | nucleus | 12.27 | 6.25 |
| CDY46642 | Canola | nucleus | 11.04 | 6.23 |
| CDY41556 | Canola | nucleus | 11.04 | 6.21 |
| CDY27523 | Canola | nucleus | 11.66 | 5.88 |
| CDY48016 | Canola | nucleus | 11.66 | 5.83 |
| CDX80046 | Canola | nucleus | 11.04 | 5.7 |
| CDY41557 | Canola | nucleus | 11.04 | 5.7 |
| CDY00446 | Canola | nucleus | 11.66 | 5.59 |
| CDX74070 | Canola | cytosol | 12.27 | 5.56 |
| CDY08023 | Canola | nucleus | 12.27 | 5.56 |
| CDY47382 | Canola | golgi, plastid | 14.11 | 5.53 |
| CDY67263 | Canola | nucleus | 10.43 | 5.18 |
| CDY24657 | Canola | nucleus | 10.43 | 5.0 |
| CDY05301 | Canola | nucleus | 10.43 | 4.84 |
| CDY13782 | Canola | nucleus | 8.59 | 4.56 |
| CDX76950 | Canola | nucleus | 8.59 | 4.55 |
| CDY15850 | Canola | nucleus | 7.98 | 3.51 |
| CDY21399 | Canola | mitochondrion | 3.07 | 3.45 |
| CDY13339 | Canola | mitochondrion | 3.07 | 2.98 |
Protein Annotations
| EnsemblPlants:CDX75170 | EnsemblPlantsGene:GSBRNA2T00119065001 | Gene3D:3.30.70.330 | GO:A0A078CE73 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR44291 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:CDX75170 | ProteinID:CDX75170.1 | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI0004EC75DD | MapMan:35.2 | : | : | : |
Description
BnaC09g25120D
Coordinates
chrLK031803:+:2026252..2027321
Molecular Weight (calculated)
18713.9 Da
IEP (calculated)
10.229
GRAVY (calculated)
-0.061
Length
163 amino acids
Sequence
(BLAST)
(BLAST)
001: MRLSTPTTIP YSMHLLFLLV DESPSIKSRC STTIRVYILR FWEARKVSRD GELMGVDMLL LDGKLPGIPF SSTLKKYIFL GGLASSVTET DFKKYFALFG
101: TIIDLVVVYD HKTHRRRGFG LVTYNEEAVD LQKTFHELDG KWLSSKWLSL RKRHPAQTRI LAA
101: TIIDLVVVYD HKTHRRRGFG LVTYNEEAVD LQKTFHELDG KWLSSKWLSL RKRHPAQTRI LAA
001: MLLKESSCLN ISLMVEAKKA VPRDDHVVFN KSNSSLQGSP GPSNSKKIFV GGLASSVTEA EFKKYFAQFG MITDVVVMYD HRTQRPRGFG FISYDSEEAV
101: DKVLQKTFHE LNGKMVEVKL AVPKDMALNT MRNQMNVNSF GTSRISSLLN EYTQGFSPSP ISGYGVKPEV RYSPAVGNRG GFSPFGHGYG IELNFEPNQT
201: QNYGSGSSGG FGRPFSPGYA ASLGRFGSQM ESGGASVGNG SVLNAAPKNH LWGNGGLGYM SNSPISRSSF SGNSGMSSLG SIGDNWGTVA RARSSYHGER
301: GGVGLEAMRG VHVGGYSSGS SILEADSLYS DSMWLSLPAK AEEGLGMGPL DFMSRGPAGY INRQPNGGIA A
101: DKVLQKTFHE LNGKMVEVKL AVPKDMALNT MRNQMNVNSF GTSRISSLLN EYTQGFSPSP ISGYGVKPEV RYSPAVGNRG GFSPFGHGYG IELNFEPNQT
201: QNYGSGSSGG FGRPFSPGYA ASLGRFGSQM ESGGASVGNG SVLNAAPKNH LWGNGGLGYM SNSPISRSSF SGNSGMSSLG SIGDNWGTVA RARSSYHGER
301: GGVGLEAMRG VHVGGYSSGS SILEADSLYS DSMWLSLPAK AEEGLGMGPL DFMSRGPAGY INRQPNGGIA A
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JYK6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.