Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004508.1-P | Field mustard | nucleus | 96.21 | 89.42 |
| CDX80046 | Canola | nucleus | 96.55 | 88.61 |
| CDY41557 | Canola | nucleus | 94.48 | 86.71 |
| CDY48016 | Canola | nucleus | 88.28 | 78.53 |
| CDY27523 | Canola | nucleus | 87.24 | 78.33 |
| AT2G46780.1 | Thale cress | nucleus | 85.86 | 74.11 |
| VIT_15s0048g02630.t01 | Wine grape | nucleus | 51.03 | 55.43 |
| CDY51790 | Canola | cytosol | 18.28 | 49.53 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 18.97 | 49.11 |
| KRH47819 | Soybean | nucleus | 48.62 | 47.64 |
| KRH06384 | Soybean | nucleus | 48.97 | 47.18 |
| KRH06373 | Soybean | nucleus | 44.83 | 46.93 |
| CDX73279 | Canola | cytosol | 36.55 | 43.8 |
| KRH47808 | Soybean | nucleus | 42.07 | 42.66 |
| CDY69197 | Canola | nucleus | 32.76 | 42.22 |
| CDY04769 | Canola | nucleus | 33.45 | 40.93 |
| CDY31508 | Canola | nucleus | 35.17 | 40.8 |
| CDY33653 | Canola | nucleus | 34.48 | 39.53 |
| CDY31859 | Canola | nucleus | 32.76 | 39.42 |
| CDY01349 | Canola | nucleus | 32.41 | 39.0 |
| CDX96615 | Canola | nucleus | 33.79 | 38.89 |
| CDY29496 | Canola | nucleus | 34.83 | 38.7 |
| CDX88283 | Canola | nucleus | 36.9 | 38.21 |
| CDY25759 | Canola | nucleus | 31.72 | 36.95 |
| CDX88432 | Canola | nucleus | 35.17 | 35.92 |
| CDY02889 | Canola | nucleus | 26.55 | 35.48 |
| CDX87460 | Canola | nucleus | 34.83 | 35.44 |
| CDX73451 | Canola | cytosol | 30.34 | 35.2 |
| CDY64698 | Canola | nucleus | 31.03 | 34.48 |
| CDX78261 | Canola | nucleus | 30.34 | 33.98 |
| CDX68024 | Canola | nucleus | 33.1 | 33.92 |
| CDX87594 | Canola | nucleus | 37.24 | 33.75 |
| CDY21356 | Canola | nucleus | 33.45 | 33.45 |
| CDY46642 | Canola | nucleus | 33.1 | 33.22 |
| CDX79253 | Canola | nucleus | 32.07 | 33.21 |
| CDY00446 | Canola | nucleus | 33.1 | 28.24 |
| CDY67263 | Canola | nucleus | 31.72 | 28.05 |
| CDY13339 | Canola | mitochondrion | 16.21 | 27.98 |
| CDY21399 | Canola | mitochondrion | 10.34 | 20.69 |
| CDY05301 | Canola | nucleus | 20.0 | 16.52 |
| CDY24657 | Canola | nucleus | 19.31 | 16.47 |
| CDY13782 | Canola | nucleus | 16.21 | 15.31 |
| CDY08023 | Canola | nucleus | 18.97 | 15.28 |
| CDX76950 | Canola | nucleus | 16.21 | 15.26 |
| CDY26229 | Canola | nucleus | 19.31 | 15.09 |
| CDY48318 | Canola | nucleus | 19.31 | 15.05 |
| CDX74070 | Canola | cytosol | 18.62 | 15.0 |
| CDY55846 | Canola | nucleus | 20.0 | 14.46 |
| CDY67299 | Canola | nucleus | 18.97 | 14.44 |
| CDY25867 | Canola | nucleus | 20.0 | 14.32 |
| CDY17173 | Canola | nucleus | 18.28 | 14.06 |
| CDY24106 | Canola | nucleus | 20.0 | 14.04 |
| CDY26001 | Canola | nucleus | 19.66 | 14.0 |
| CDY23739 | Canola | nucleus | 18.28 | 13.84 |
| CDY37724 | Canola | nucleus | 15.17 | 13.62 |
| CDX79527 | Canola | nucleus | 18.97 | 13.55 |
| CDY12068 | Canola | nucleus | 16.55 | 13.41 |
| CDX84689 | Canola | nucleus | 18.62 | 13.24 |
| CDY06947 | Canola | nucleus | 19.31 | 13.02 |
| CDY42724 | Canola | cytosol | 16.9 | 12.93 |
| CDY50131 | Canola | nucleus | 16.9 | 12.83 |
| CDY69852 | Canola | cytosol | 16.9 | 12.83 |
| CDX90262 | Canola | nucleus | 16.55 | 12.57 |
| CDX77783 | Canola | nucleus | 18.28 | 12.47 |
| CDY57580 | Canola | nucleus | 18.97 | 12.42 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 17.24 | 12.05 |
| CDY41059 | Canola | nucleus | 17.59 | 11.94 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 16.9 | 11.92 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 14.14 | 11.85 |
| CDY15850 | Canola | nucleus | 14.83 | 11.62 |
| CDY24201 | Canola | nucleus | 14.48 | 11.6 |
| CDY43360 | Canola | nucleus | 14.48 | 11.6 |
| CDY36753 | Canola | nucleus | 17.24 | 11.49 |
| CDX76015 | Canola | nucleus | 12.07 | 11.48 |
| CDY07975 | Canola | nucleus | 18.28 | 11.25 |
| CDX74030 | Canola | nucleus | 18.28 | 11.23 |
| CDY46690 | Canola | nucleus | 16.55 | 11.21 |
| CDY28918 | Canola | mitochondrion | 18.62 | 11.16 |
| CDY27186 | Canola | nucleus | 17.24 | 11.14 |
| CDX75170 | Canola | extracellular | 6.21 | 11.04 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 13.79 | 11.02 |
| CDX69279 | Canola | nucleus | 8.97 | 11.02 |
| CDX72106 | Canola | nucleus | 17.24 | 10.99 |
| CDY35966 | Canola | nucleus | 18.62 | 10.93 |
| CDY11989 | Canola | nucleus | 16.21 | 10.88 |
| CDY66272 | Canola | nucleus | 18.28 | 10.84 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 13.45 | 10.71 |
| CDX89316 | Canola | endoplasmic reticulum | 16.21 | 10.51 |
| CDY22136 | Canola | nucleus | 17.59 | 10.49 |
| CDX94301 | Canola | nucleus | 15.86 | 10.41 |
| CDY46689 | Canola | nucleus | 16.55 | 10.37 |
| CDX92807 | Canola | nucleus | 15.86 | 10.22 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 12.76 | 10.19 |
| CDY36357 | Canola | nucleus | 17.24 | 9.23 |
| CDY42577 | Canola | nucleus | 17.24 | 9.17 |
| CDY47382 | Canola | golgi, plastid | 13.1 | 9.13 |
| CDY25957 | Canola | nucleus | 17.24 | 9.04 |
| CDY40554 | Canola | nucleus | 18.28 | 8.08 |
| CDX69277 | Canola | mitochondrion | 4.83 | 7.53 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078HV30 | UniProt:A0A078HV30 | EnsemblPlants:CDY41556 | ProteinID:CDY41556 |
| ProteinID:CDY41556.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00073191001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44374 |
| PANTHER:PTHR44374:SF3 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EEA1D6 |
| SEG:seg | : | : | : | : | : |
Description
BnaC04g00660DBnaC04g00660D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HV30]
Coordinates
chrLK032500:+:211236..213651
Molecular Weight (calculated)
31881.3 Da
IEP (calculated)
9.805
GRAVY (calculated)
-0.630
Length
290 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQQQRQQFQ MGDTKLTKIF VGGLAWETQK DTMRRYFEQF GEIVEAVVIS DKNTGRSKGY GFVTFKEGEA AMRACQNMNP VIDGRRANCN LAFLGAHKPR
101: PPTSPRHGTG RFRSPGGAGL VAPSPQFRGS SSSSAFVQHT GQFPIPYSAY GFSGYSQEGM YPMNYYNHHL YGGQQFSPYM GPPTSGSTGM FHGYYPYYPQ
201: YNPAQSSNQA QAPAQTHHQG FSFQYTTPPA PPVLHYPYLP HQQFSSQPPP PPILSLPTSL ALSLASSAPS SSSSASTSGP HVDIYIQRKR
101: PPTSPRHGTG RFRSPGGAGL VAPSPQFRGS SSSSAFVQHT GQFPIPYSAY GFSGYSQEGM YPMNYYNHHL YGGQQFSPYM GPPTSGSTGM FHGYYPYYPQ
201: YNPAQSSNQA QAPAQTHHQG FSFQYTTPPA PPVLHYPYLP HQQFSSQPPP PPILSLPTSL ALSLASSAPS SSSSASTSGP HVDIYIQRKR
001: MAQQRQFQME GGNNNTTDTK LTKIFVGGLA WETQRDTMRR YFEQFGEIVE AVVITDKNTG RSKGYGFVTF KEAEAAMRAC QNMNPVIDGR RANCNLACLG
101: AQKPRPPTSP RHGTGRFRSP GSGVGLVAPS PQFRGSSSSS AFVHQQQQQH TAQFPFPYST YGFSGYSQEG MYPMNYYNHH LYGGQQFSPY MGHPSAGSTG
201: MFHGFYPYYP QYNAAQSSNQ AQAQVQAQHH QGFSFQYTAP PAPPLLQYPY LPHQPHFSSQ QQFSSQQPPP PILSLPTSLA LSLPSSSSPS SSTSTSAATT
301: ATKTVVITTA TKKAETEASS KDGNEAMTTS TIKIEG
101: AQKPRPPTSP RHGTGRFRSP GSGVGLVAPS PQFRGSSSSS AFVHQQQQQH TAQFPFPYST YGFSGYSQEG MYPMNYYNHH LYGGQQFSPY MGHPSAGSTG
201: MFHGFYPYYP QYNAAQSSNQ AQAQVQAQHH QGFSFQYTAP PAPPLLQYPY LPHQPHFSSQ QQFSSQQPPP PILSLPTSLA LSLPSSSSPS SSTSTSAATT
301: ATKTVVITTA TKKAETEASS KDGNEAMTTS TIKIEG
Arabidopsis Description
At2g46780 [Source:UniProtKB/TrEMBL;Acc:Q501B0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.