Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY28918 | Canola | mitochondrion | 66.46 | 90.08 |
| Bra022145.1-P | Field mustard | nucleus | 62.04 | 88.48 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 55.34 | 87.47 |
| CDY41059 | Canola | nucleus | 56.86 | 87.35 |
| CDX77783 | Canola | nucleus | 56.1 | 86.59 |
| AT5G47620.4 | Thale cress | cytoskeleton, cytosol, nucleus | 56.25 | 81.46 |
| CDY25957 | Canola | nucleus | 55.95 | 66.37 |
| CDY50131 | Canola | nucleus | 37.2 | 63.87 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 37.96 | 60.58 |
| GSMUA_Achr10P... | Banana | nucleus | 31.86 | 47.5 |
| GSMUA_Achr10P... | Banana | nucleus | 32.32 | 46.09 |
| GSMUA_Achr6P10970_001 | Banana | nucleus | 34.6 | 45.4 |
| Os11t0637700-01 | Rice | plasma membrane | 32.01 | 44.97 |
| HORVU0Hr1G008280.1 | Barley | nucleus | 31.71 | 44.92 |
| TraesCS4A01G150600.1 | Wheat | nucleus | 31.71 | 44.92 |
| TraesCS4D01G152200.1 | Wheat | nucleus | 31.55 | 44.71 |
| TraesCSU01G068500.1 | Wheat | nucleus | 31.55 | 44.71 |
| Os07t0584500-01 | Rice | nucleus | 32.16 | 44.7 |
| GSMUA_Achr4P33100_001 | Banana | nucleus | 29.88 | 44.34 |
| CDX74030 | Canola | nucleus | 31.55 | 43.86 |
| CDY07975 | Canola | nucleus | 31.4 | 43.74 |
| Zm00001d019079_P001 | Maize | cytosol | 29.73 | 43.53 |
| TraesCS2B01G216600.2 | Wheat | cytosol | 31.25 | 43.52 |
| TraesCS2D01G197500.2 | Wheat | nucleus | 30.95 | 43.19 |
| Zm00001d007772_P001 | Maize | nucleus | 29.42 | 42.98 |
| EER96020 | Sorghum | nucleus | 29.73 | 42.86 |
| CDY22136 | Canola | nucleus | 31.71 | 42.8 |
| EER98147 | Sorghum | nucleus | 29.42 | 42.6 |
| EER97452 | Sorghum | nucleus | 30.49 | 42.46 |
| CDY66272 | Canola | nucleus | 31.1 | 41.72 |
| Zm00001d019084_P002 | Maize | nucleus | 28.51 | 41.19 |
| CDY35966 | Canola | nucleus | 30.79 | 40.89 |
| Zm00001d006704_P002 | Maize | nucleus | 30.03 | 40.7 |
| CDY11989 | Canola | nucleus | 26.68 | 40.51 |
| CDX92807 | Canola | nucleus | 27.74 | 40.44 |
| CDX94301 | Canola | nucleus | 27.13 | 40.27 |
| CDX89316 | Canola | endoplasmic reticulum | 27.44 | 40.27 |
| CDY36753 | Canola | nucleus | 26.52 | 40.0 |
| CDY46690 | Canola | nucleus | 25.76 | 39.49 |
| CDY46689 | Canola | nucleus | 27.44 | 38.88 |
| TraesCS2A01G190400.1 | Wheat | plastid | 31.25 | 38.61 |
| CDX75170 | Canola | extracellular | 9.45 | 38.04 |
| CDY12068 | Canola | nucleus | 20.58 | 37.71 |
| Zm00001d019086_P001 | Maize | nucleus | 30.18 | 37.22 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 30.64 | 37.15 |
| CDY23739 | Canola | nucleus | 21.04 | 36.03 |
| CDX90262 | Canola | nucleus | 20.88 | 35.86 |
| OQU83904 | Sorghum | nucleus | 24.39 | 35.56 |
| CDY17173 | Canola | nucleus | 20.43 | 35.54 |
| CDY67299 | Canola | nucleus | 20.58 | 35.43 |
| CDX84689 | Canola | nucleus | 21.34 | 34.31 |
| CDX79527 | Canola | nucleus | 21.04 | 33.99 |
| CDY37724 | Canola | nucleus | 16.16 | 32.82 |
| GSMUA_Achr3P02300_001 | Banana | nucleus | 32.01 | 30.93 |
| CDY26229 | Canola | nucleus | 16.77 | 29.65 |
| CDY48318 | Canola | nucleus | 16.77 | 29.57 |
| CDY24201 | Canola | nucleus | 16.01 | 29.01 |
| CDY43360 | Canola | nucleus | 16.01 | 29.01 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 16.01 | 28.85 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 15.85 | 28.65 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 14.63 | 27.75 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 15.24 | 27.55 |
| CDY51790 | Canola | cytosol | 4.42 | 27.1 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 4.57 | 26.79 |
| CDY69852 | Canola | cytosol | 13.72 | 23.56 |
| CDY42724 | Canola | cytosol | 13.57 | 23.48 |
| CDY36357 | Canola | nucleus | 18.9 | 22.88 |
| CDY42577 | Canola | nucleus | 18.6 | 22.39 |
| CDY04769 | Canola | nucleus | 7.93 | 21.94 |
| CDY31508 | Canola | nucleus | 8.23 | 21.6 |
| CDY69197 | Canola | nucleus | 7.32 | 21.33 |
| CDY33653 | Canola | nucleus | 8.08 | 20.95 |
| CDY01349 | Canola | nucleus | 7.62 | 20.75 |
| CDY31859 | Canola | nucleus | 7.62 | 20.75 |
| CDX73279 | Canola | cytosol | 7.62 | 20.66 |
| CDY25759 | Canola | nucleus | 7.77 | 20.48 |
| CDX69279 | Canola | nucleus | 7.32 | 20.34 |
| CDY29496 | Canola | nucleus | 8.08 | 20.31 |
| CDX96615 | Canola | nucleus | 7.77 | 20.24 |
| CDY02889 | Canola | nucleus | 6.55 | 19.82 |
| CDX88283 | Canola | nucleus | 8.38 | 19.64 |
| CDX73451 | Canola | cytosol | 7.01 | 18.4 |
| CDY41556 | Canola | nucleus | 8.08 | 18.28 |
| CDX79253 | Canola | nucleus | 7.62 | 17.86 |
| CDX68024 | Canola | nucleus | 7.62 | 17.67 |
| CDX88432 | Canola | nucleus | 7.62 | 17.61 |
| CDX87460 | Canola | nucleus | 7.62 | 17.54 |
| CDX78261 | Canola | nucleus | 6.86 | 17.37 |
| CDX87594 | Canola | nucleus | 8.38 | 17.19 |
| CDX80046 | Canola | nucleus | 8.23 | 17.09 |
| CDY27523 | Canola | nucleus | 8.38 | 17.03 |
| CDY21356 | Canola | nucleus | 7.47 | 16.9 |
| CDY48016 | Canola | nucleus | 8.38 | 16.87 |
| CDY41557 | Canola | nucleus | 8.08 | 16.77 |
| CDY08023 | Canola | nucleus | 9.15 | 16.67 |
| CDY46642 | Canola | nucleus | 7.16 | 16.26 |
| CDY26001 | Canola | nucleus | 10.06 | 16.22 |
| CDX74070 | Canola | cytosol | 8.84 | 16.11 |
| CDY64698 | Canola | nucleus | 6.4 | 16.09 |
| CDY25867 | Canola | nucleus | 9.91 | 16.05 |
| CDY24106 | Canola | nucleus | 10.06 | 15.98 |
| CDY55846 | Canola | nucleus | 9.76 | 15.96 |
| CDY67263 | Canola | nucleus | 7.77 | 15.55 |
| CDY13782 | Canola | nucleus | 7.16 | 15.31 |
| CDX76950 | Canola | nucleus | 7.01 | 14.94 |
| CDY21399 | Canola | mitochondrion | 3.2 | 14.48 |
| CDY27186 | Canola | nucleus | 9.91 | 14.48 |
| CDX76015 | Canola | nucleus | 6.71 | 14.43 |
| CDY00446 | Canola | nucleus | 7.47 | 14.41 |
| CDX72106 | Canola | nucleus | 9.91 | 14.29 |
| CDY24657 | Canola | nucleus | 7.01 | 13.53 |
| CDY05301 | Canola | nucleus | 7.01 | 13.11 |
| CDY13339 | Canola | mitochondrion | 3.35 | 13.1 |
| CDY57580 | Canola | nucleus | 8.69 | 12.87 |
| CDY06947 | Canola | nucleus | 8.23 | 12.56 |
| CDY15850 | Canola | nucleus | 6.86 | 12.16 |
| CDX69277 | Canola | mitochondrion | 3.2 | 11.29 |
| CDY47382 | Canola | golgi, plastid | 6.86 | 10.82 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078HTE3 | UniProt:A0A078HTE3 | EnsemblPlants:CDY40554 | ProteinID:CDY40554 |
| ProteinID:CDY40554.1 | InterPro:DAZAP1_RRM2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| EnsemblPlantsGene:GSBRNA2T00069879001 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 |
| PANTHER:PTHR44291 | PANTHER:PTHR44291:SF3 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI0004EE5C22 | SEG:seg | : | : | : | : |
Description
BnaC02g33380DBnaC02g33380D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HTE3]
Coordinates
chrLK032474:+:69201..76277
Molecular Weight (calculated)
71030.4 Da
IEP (calculated)
9.025
GRAVY (calculated)
-0.234
Length
656 amino acids
Sequence
(BLAST)
(BLAST)
001: MATIKMENDV SVTLSLFDSQ VVALHKNLED MHVDPKVIVA TNINPKMVGG RLFLNATSET HIYFDRETSA GETCFYKDTG LLSVAPLLRA YAEVENVTMA
101: ELKFFIIMAS SQEIDFLCPG RVSRVDTYKG WCYVACSKYS SKLHRSASAF ECVSCSNSHA VGALRSRVTS IGGKHLPKVH EAIAQSSKFG MDMKASSLCA
201: IESRIVGRSV LRIRSRPSSS FSSTHPSLFS KRMEMESCKL FIGGISWETT EDRLREYFQS FGEVLEAVIM KDRATGRARG FGFLVFSDPI VAERVVFLRH
301: VIDGKLVEAK KAVPRDDHVV LNKSYNTSLQ GSPGPANSKK IFVGGLASSV TEAEFKKYFA QFGVITDVVV MYDHRTQRPR GFGFISFESE DAVDKVLQRT
401: FHELNGKMVE VKLAVPKEMA LNPIRNQMNV NSFGSSRISA LLMNEYTQGF SPSPISGYGV KPEVRYSPGL GNRGGGFSPF GHGYGIELNF EPDQSQNFGS
501: GSSAGFGRPL SPGYAPSLGR YGSQIESGGA GNGPVLNAAT KNHLWGNGGG LGYMSNSPIS RSSFNGMSSL GSIGDNSRRN SYRSEGGGGL GLEAMRGGHV
601: GGYSSGSSSL ETDSLYSDSA WLSLPAKAEE RMGAFDFMSR GPAGYINRQP NGGIAA
101: ELKFFIIMAS SQEIDFLCPG RVSRVDTYKG WCYVACSKYS SKLHRSASAF ECVSCSNSHA VGALRSRVTS IGGKHLPKVH EAIAQSSKFG MDMKASSLCA
201: IESRIVGRSV LRIRSRPSSS FSSTHPSLFS KRMEMESCKL FIGGISWETT EDRLREYFQS FGEVLEAVIM KDRATGRARG FGFLVFSDPI VAERVVFLRH
301: VIDGKLVEAK KAVPRDDHVV LNKSYNTSLQ GSPGPANSKK IFVGGLASSV TEAEFKKYFA QFGVITDVVV MYDHRTQRPR GFGFISFESE DAVDKVLQRT
401: FHELNGKMVE VKLAVPKEMA LNPIRNQMNV NSFGSSRISA LLMNEYTQGF SPSPISGYGV KPEVRYSPGL GNRGGGFSPF GHGYGIELNF EPDQSQNFGS
501: GSSAGFGRPL SPGYAPSLGR YGSQIESGGA GNGPVLNAAT KNHLWGNGGG LGYMSNSPIS RSSFNGMSSL GSIGDNSRRN SYRSEGGGGL GLEAMRGGHV
601: GGYSSGSSSL ETDSLYSDSA WLSLPAKAEE RMGAFDFMSR GPAGYINRQP NGGIAA
001: MEMESCKLFI GGISWETSED RLRDYFHSFG EVLEAVIMKD RATGRARGFG FVVFADPNVA ERVVLLKHII DGKIVEAKKA VPRDDHVVFN KSNSSLQGSP
101: GPSNSKKIFV GGLASSVTEA EFKKYFAQFG MITDVVVMYD HRTQRPRGFG FISYDSEEAV DKVLQKTFHE LNGKMVEVKL AVPKDMALNT MRNQMNVNSF
201: GTSRISSLLN EYTQGFSPSP ISGYGVKPEV RYSPAVGNRG GFSPFGHGYG IELNFEPNQT QNYGSGSSGG FGRPFSPGYA ASLGRFGSQM ESGGASVGNG
301: SVLNAAPKNH LWGNGGLGYM SNSPISRSSF SGNSGMSSLG SIGDNWGTVA RARSSYHGER GGVGLEAMRG VHVGGYSSGS SILEADSLYS DSMWLSLPAK
401: AEEGLGMGPL DFMSRGPAGY INRQPNGGIA A
101: GPSNSKKIFV GGLASSVTEA EFKKYFAQFG MITDVVVMYD HRTQRPRGFG FISYDSEEAV DKVLQKTFHE LNGKMVEVKL AVPKDMALNT MRNQMNVNSF
201: GTSRISSLLN EYTQGFSPSP ISGYGVKPEV RYSPAVGNRG GFSPFGHGYG IELNFEPNQT QNYGSGSSGG FGRPFSPGYA ASLGRFGSQM ESGGASVGNG
301: SVLNAAPKNH LWGNGGLGYM SNSPISRSSF SGNSGMSSLG SIGDNWGTVA RARSSYHGER GGVGLEAMRG VHVGGYSSGS SILEADSLYS DSMWLSLPAK
401: AEEGLGMGPL DFMSRGPAGY INRQPNGGIA A
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JYK6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.