Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012350.1-P | Field mustard | nucleus | 99.6 | 99.6 |
| CDY04769 | Canola | nucleus | 83.94 | 88.19 |
| CDY69197 | Canola | nucleus | 78.31 | 86.67 |
| CDY21399 | Canola | mitochondrion | 49.4 | 84.83 |
| CDY67263 | Canola | nucleus | 96.79 | 73.48 |
| KRH75298 | Soybean | cytosol, nucleus | 28.51 | 71.72 |
| KRH13261 | Soybean | cytosol | 32.93 | 66.13 |
| AT1G22910.3 | Thale cress | nucleus | 82.33 | 59.08 |
| Solyc11g044470.1.1 | Tomato | mitochondrion, nucleus, plastid | 49.8 | 47.51 |
| PGSC0003DMT400008944 | Potato | nucleus | 49.8 | 46.97 |
| VIT_18s0089g00920.t01 | Wine grape | nucleus | 50.6 | 46.84 |
| KRH23771 | Soybean | nucleus | 49.0 | 44.85 |
| KRH40033 | Soybean | nucleus | 49.0 | 44.85 |
| CDY51790 | Canola | cytosol | 18.88 | 43.93 |
| EES01849 | Sorghum | nucleus | 46.18 | 43.89 |
| CDX73279 | Canola | cytosol | 41.77 | 42.98 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 18.88 | 41.96 |
| GSMUA_Achr8P08440_001 | Banana | nucleus | 42.97 | 41.31 |
| GSMUA_Achr3P21850_001 | Banana | nucleus | 43.37 | 41.22 |
| GSMUA_Achr6P17510_001 | Banana | cytosol, mitochondrion, nucleus | 44.58 | 41.11 |
| GSMUA_Achr10P... | Banana | nucleus | 44.58 | 40.96 |
| KRH62942 | Soybean | mitochondrion | 33.33 | 40.69 |
| Zm00001d042641_P001 | Maize | nucleus | 46.18 | 38.98 |
| CDY31508 | Canola | nucleus | 38.96 | 38.8 |
| Os01t0876800-00 | Rice | nucleus | 46.18 | 38.33 |
| TraesCS3D01G380100.1 | Wheat | nucleus | 45.38 | 38.18 |
| CDY31859 | Canola | nucleus | 36.55 | 37.76 |
| TraesCS3B01G419200.1 | Wheat | nucleus | 44.58 | 37.5 |
| TraesCS3A01G389600.1 | Wheat | nucleus | 44.58 | 37.37 |
| CDY33653 | Canola | nucleus | 37.75 | 37.15 |
| CDY29496 | Canola | nucleus | 38.55 | 36.78 |
| CDY01349 | Canola | nucleus | 35.34 | 36.51 |
| CDX96615 | Canola | nucleus | 36.55 | 36.11 |
| TraesCS3B01G562300.3 | Wheat | mitochondrion | 42.17 | 33.65 |
| CDX88283 | Canola | nucleus | 37.75 | 33.57 |
| TraesCS3A01G499100.1 | Wheat | cytosol, nucleus, plastid | 41.77 | 33.33 |
| Zm00001d012238_P003 | Maize | nucleus, plasma membrane, plastid | 45.38 | 33.24 |
| TraesCS3D01G505900.1 | Wheat | mitochondrion | 42.17 | 33.23 |
| HORVU3Hr1G110370.1 | Barley | cytosol, mitochondrion, nucleus | 41.77 | 33.23 |
| CDY02889 | Canola | nucleus | 28.92 | 33.18 |
| Os01t0958500-01 | Rice | nucleus | 40.16 | 32.26 |
| CDX73451 | Canola | cytosol | 32.13 | 32.0 |
| CDY41556 | Canola | nucleus | 36.95 | 31.72 |
| CDX78261 | Canola | nucleus | 32.13 | 30.89 |
| EES02078 | Sorghum | nucleus | 41.37 | 30.47 |
| CDX87594 | Canola | nucleus | 38.96 | 30.31 |
| CDY64698 | Canola | nucleus | 31.73 | 30.27 |
| Zm00001d042042_P001 | Maize | nucleus | 40.16 | 29.41 |
| CDX87460 | Canola | nucleus | 33.33 | 29.12 |
| CDX80046 | Canola | nucleus | 36.95 | 29.11 |
| CDY41557 | Canola | nucleus | 36.55 | 28.8 |
| CDX88432 | Canola | nucleus | 32.53 | 28.52 |
| CDY48016 | Canola | nucleus | 36.95 | 28.22 |
| CDY27523 | Canola | nucleus | 36.55 | 28.17 |
| CDX79253 | Canola | nucleus | 31.33 | 27.86 |
| CDY46642 | Canola | nucleus | 31.73 | 27.34 |
| CDX68024 | Canola | nucleus | 30.92 | 27.21 |
| CDY21356 | Canola | nucleus | 31.33 | 26.9 |
| CDY13339 | Canola | mitochondrion | 16.06 | 23.81 |
| CDY00446 | Canola | nucleus | 31.33 | 22.94 |
| GSMUA_Achr6P24180_001 | Banana | cytosol | 42.97 | 16.04 |
| CDY05301 | Canola | nucleus | 22.49 | 15.95 |
| CDY24657 | Canola | nucleus | 21.69 | 15.88 |
| CDX74070 | Canola | cytosol | 20.88 | 14.44 |
| CDY08023 | Canola | nucleus | 20.88 | 14.44 |
| CDY13782 | Canola | nucleus | 17.67 | 14.33 |
| CDX76950 | Canola | nucleus | 17.67 | 14.29 |
| CDY37724 | Canola | nucleus | 17.67 | 13.62 |
| CDY12068 | Canola | nucleus | 19.28 | 13.41 |
| CDY50131 | Canola | nucleus | 20.08 | 13.09 |
| CDY25867 | Canola | nucleus | 21.29 | 13.09 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 21.69 | 13.01 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 18.07 | 13.01 |
| CDY24201 | Canola | nucleus | 18.88 | 12.98 |
| CDY43360 | Canola | nucleus | 18.88 | 12.98 |
| CDY26229 | Canola | nucleus | 19.28 | 12.94 |
| CDY48318 | Canola | nucleus | 19.28 | 12.9 |
| CDX90262 | Canola | nucleus | 19.68 | 12.83 |
| CDY26001 | Canola | nucleus | 20.88 | 12.78 |
| CDY55846 | Canola | nucleus | 20.48 | 12.72 |
| CDY41059 | Canola | nucleus | 21.69 | 12.65 |
| CDY67299 | Canola | nucleus | 19.28 | 12.6 |
| CDY24106 | Canola | nucleus | 20.88 | 12.59 |
| CDX77783 | Canola | nucleus | 21.29 | 12.47 |
| CDY17173 | Canola | nucleus | 18.88 | 12.47 |
| CDY23739 | Canola | nucleus | 18.88 | 12.27 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 20.08 | 12.17 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 17.27 | 11.85 |
| CDX79527 | Canola | nucleus | 19.28 | 11.82 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 17.27 | 11.81 |
| CDX84689 | Canola | nucleus | 18.88 | 11.52 |
| CDY42724 | Canola | cytosol | 17.27 | 11.35 |
| CDY69852 | Canola | cytosol | 17.27 | 11.26 |
| CDY06947 | Canola | nucleus | 18.88 | 10.93 |
| CDY27186 | Canola | nucleus | 19.68 | 10.91 |
| CDY07975 | Canola | nucleus | 20.48 | 10.83 |
| CDX74030 | Canola | nucleus | 20.48 | 10.81 |
| CDX72106 | Canola | nucleus | 19.68 | 10.77 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 15.66 | 10.74 |
| CDY57580 | Canola | nucleus | 18.88 | 10.61 |
| CDY28918 | Canola | mitochondrion | 20.48 | 10.54 |
| CDY46690 | Canola | nucleus | 18.07 | 10.51 |
| CDY22136 | Canola | nucleus | 20.48 | 10.49 |
| CDX76015 | Canola | nucleus | 12.85 | 10.49 |
| CDX75170 | Canola | extracellular | 6.83 | 10.43 |
| CDY36753 | Canola | nucleus | 18.07 | 10.34 |
| CDY66272 | Canola | nucleus | 20.08 | 10.22 |
| CDY35966 | Canola | nucleus | 20.08 | 10.12 |
| CDY15850 | Canola | nucleus | 14.86 | 10.0 |
| CDY11989 | Canola | nucleus | 17.27 | 9.95 |
| CDX92807 | Canola | nucleus | 17.67 | 9.78 |
| CDX69279 | Canola | nucleus | 9.24 | 9.75 |
| CDX94301 | Canola | nucleus | 17.27 | 9.73 |
| CDY46689 | Canola | nucleus | 18.07 | 9.72 |
| CDY25957 | Canola | nucleus | 21.29 | 9.58 |
| CDY36357 | Canola | nucleus | 20.48 | 9.41 |
| CDY42577 | Canola | nucleus | 20.08 | 9.17 |
| CDX89316 | Canola | endoplasmic reticulum | 16.06 | 8.95 |
| CDY47382 | Canola | golgi, plastid | 13.25 | 7.93 |
| CDY40554 | Canola | nucleus | 20.48 | 7.77 |
| CDX69277 | Canola | mitochondrion | 4.02 | 5.38 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078GKG4 | UniProt:A0A078GKG4 | EnsemblPlants:CDY25759 | ProteinID:CDY25759 |
| ProteinID:CDY25759.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00033147001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44374 |
| PANTHER:PTHR44374:SF1 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EE2425 |
| SEG:seg | : | : | : | : | : |
Description
BnaA07g10230DBnaA07g10230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GKG4]
Coordinates
chrLK032180:+:130451..132527
Molecular Weight (calculated)
26540.1 Da
IEP (calculated)
8.558
GRAVY (calculated)
-0.362
Length
249 amino acids
Sequence
(BLAST)
(BLAST)
001: MTGGIGLGDT TYTKVFVGGL AWETHKDTLK KHFEQFGEIL EAVVITDKAS GRSKGYGFVT FKEADAASKA CVDATPVIDG RRANCNLASL GLQRSKPSTP
101: NHGGGRINNM RVMMNTMQTG FGPPHPPTTF SHYPQLPLNL FGYSPYSSDF SPFPTSLYGV YDCYSGGQYG LYSNGNGGSG GLTAAAASAA PFYPCGSGGG
201: HGGVQFTQPQ PFYHHFSSYN NPHQYSPATI SVQQGVTGFP LQPPLIPYR
101: NHGGGRINNM RVMMNTMQTG FGPPHPPTTF SHYPQLPLNL FGYSPYSSDF SPFPTSLYGV YDCYSGGQYG LYSNGNGGSG GLTAAAASAA PFYPCGSGGG
201: HGGVQFTQPQ PFYHHFSSYN NPHQYSPATI SVQQGVTGFP LQPPLIPYR
001: MAGGIGLGDT TYTKVFVGGL AWETHKETMK KHFEQFGEIL EAVVITDKAS GRSKGYGFVT FREAEAARSA CVDATPVIDG RRANCNLASL GLQRSKPSTP
101: NHGGGGRINN MRVMMSTMQT GFGPPPPPQP PTFTHYPHLP LNLFGYSPYS PDYSSFPTNL YGMYGCTSGG QYGVYGNRNS GGGGLTAAAA SATPFYPCGG
201: GHGGVQFSQP QPFYHHLSSY NPHHYSPPTF SMQQGVTGFP LQPPLIPYR
101: NHGGGGRINN MRVMMSTMQT GFGPPPPPQP PTFTHYPHLP LNLFGYSPYS PDYSSFPTNL YGMYGCTSGG QYGVYGNRNS GGGGLTAAAA SATPFYPCGG
201: GHGGVQFSQP QPFYHHLSSY NPHHYSPPTF SMQQGVTGFP LQPPLIPYR
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I321]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.