Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY69852 | Canola | cytosol | 46.19 | 28.53 |
| CDY42724 | Canola | cytosol | 45.34 | 28.23 |
| AT4G36960.2 | Thale cress | cytosol | 44.07 | 27.44 |
| Os05t0376000-00 | Rice | cytosol | 24.15 | 27.27 |
| Bra017802.1-P | Field mustard | nucleus | 45.76 | 26.47 |
| KRH77004 | Soybean | nucleus | 38.98 | 25.41 |
| KRH28467 | Soybean | cytosol | 38.98 | 25.21 |
| PGSC0003DMT400010280 | Potato | cytosol | 38.98 | 24.8 |
| VIT_07s0031g00600.t01 | Wine grape | cytosol | 37.71 | 24.79 |
| GSMUA_Achr4P24260_001 | Banana | cytosol | 34.32 | 24.62 |
| GSMUA_Achr2P14710_001 | Banana | cytosol | 37.29 | 24.51 |
| Solyc02g090910.2.1 | Tomato | nucleus | 38.98 | 24.47 |
| KXG34100 | Sorghum | cytosol | 36.02 | 23.61 |
| Zm00001d011885_P008 | Maize | cytosol | 36.02 | 23.61 |
| Os01t0945800-01 | Rice | nucleus | 36.02 | 23.42 |
| HORVU1Hr1G057660.1 | Barley | cytosol | 33.9 | 21.98 |
| TraesCS1D01G237800.3 | Wheat | cytosol | 33.9 | 21.98 |
| TraesCS1B01G249300.1 | Wheat | cytosol | 33.9 | 21.92 |
| TraesCS1A01G234200.1 | Wheat | cytosol | 33.47 | 21.64 |
| TraesCS3A01G485000.1 | Wheat | cytosol | 32.63 | 20.64 |
| TraesCS3B01G532600.3 | Wheat | cytosol | 32.63 | 20.64 |
| TraesCS3D01G480300.1 | Wheat | cytosol | 32.2 | 20.38 |
| HORVU3Hr1G105930.10 | Barley | cytoskeleton, cytosol, nucleus | 30.93 | 19.68 |
| CDX75170 | Canola | extracellular | 13.14 | 19.02 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 8.47 | 17.86 |
| CDY51790 | Canola | cytosol | 8.05 | 17.76 |
| CDX69277 | Canola | mitochondrion | 11.86 | 15.05 |
| CDY24201 | Canola | nucleus | 21.61 | 14.09 |
| CDY43360 | Canola | nucleus | 21.61 | 14.09 |
| CDY26229 | Canola | nucleus | 22.03 | 14.02 |
| CDY48318 | Canola | nucleus | 22.03 | 13.98 |
| CDY67299 | Canola | nucleus | 22.46 | 13.91 |
| CDY17173 | Canola | nucleus | 22.03 | 13.79 |
| CDY23739 | Canola | nucleus | 22.03 | 13.58 |
| CDY12068 | Canola | nucleus | 20.34 | 13.41 |
| CDX79527 | Canola | nucleus | 22.03 | 12.81 |
| CDX90262 | Canola | nucleus | 20.34 | 12.57 |
| CDY50131 | Canola | nucleus | 20.34 | 12.57 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 19.07 | 12.4 |
| CDX84689 | Canola | nucleus | 21.19 | 12.25 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 18.64 | 12.09 |
| CDY37724 | Canola | nucleus | 16.53 | 12.07 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 21.19 | 12.05 |
| CDY36753 | Canola | nucleus | 22.03 | 11.95 |
| CDY46690 | Canola | nucleus | 21.19 | 11.68 |
| CDX89316 | Canola | endoplasmic reticulum | 22.03 | 11.63 |
| CDY11989 | Canola | nucleus | 21.19 | 11.57 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 17.8 | 11.57 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 16.95 | 11.56 |
| Zm00001d042133_P003 | Maize | cytosol | 19.49 | 11.56 |
| CDX94301 | Canola | nucleus | 21.61 | 11.54 |
| CDX77783 | Canola | nucleus | 20.76 | 11.53 |
| CDY35966 | Canola | nucleus | 23.73 | 11.34 |
| CDY22136 | Canola | nucleus | 23.31 | 11.32 |
| CDY07975 | Canola | nucleus | 22.46 | 11.25 |
| CDY66272 | Canola | nucleus | 23.31 | 11.25 |
| CDY41059 | Canola | nucleus | 20.34 | 11.24 |
| CDX74030 | Canola | nucleus | 22.46 | 11.23 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 19.49 | 11.19 |
| CDX92807 | Canola | nucleus | 21.19 | 11.11 |
| CDY02889 | Canola | nucleus | 10.17 | 11.06 |
| CDY46689 | Canola | nucleus | 21.19 | 10.8 |
| CDX73279 | Canola | cytosol | 10.59 | 10.33 |
| CDY69197 | Canola | nucleus | 9.75 | 10.22 |
| CDY04769 | Canola | nucleus | 10.17 | 10.13 |
| CDX73451 | Canola | cytosol | 10.59 | 10.0 |
| CDY28918 | Canola | mitochondrion | 20.34 | 9.92 |
| CDX78261 | Canola | nucleus | 10.59 | 9.65 |
| CDY36357 | Canola | nucleus | 22.03 | 9.59 |
| CDY01349 | Canola | nucleus | 9.75 | 9.54 |
| CDY31859 | Canola | nucleus | 9.75 | 9.54 |
| CDY42577 | Canola | nucleus | 21.61 | 9.36 |
| CDY25759 | Canola | nucleus | 9.75 | 9.24 |
| CDY31508 | Canola | nucleus | 9.75 | 9.2 |
| CDY64698 | Canola | nucleus | 10.17 | 9.2 |
| CDY41556 | Canola | nucleus | 11.02 | 8.97 |
| CDY25957 | Canola | nucleus | 20.76 | 8.86 |
| CDY26001 | Canola | nucleus | 15.25 | 8.85 |
| CDX96615 | Canola | nucleus | 9.32 | 8.73 |
| CDY55846 | Canola | nucleus | 14.83 | 8.73 |
| CDX88283 | Canola | nucleus | 10.17 | 8.57 |
| CDY29496 | Canola | nucleus | 9.32 | 8.43 |
| CDY27523 | Canola | nucleus | 11.44 | 8.36 |
| CDY33653 | Canola | nucleus | 8.9 | 8.3 |
| CDY48016 | Canola | nucleus | 11.44 | 8.28 |
| CDX80046 | Canola | nucleus | 11.02 | 8.23 |
| CDY41557 | Canola | nucleus | 11.02 | 8.23 |
| CDY25867 | Canola | nucleus | 13.98 | 8.15 |
| CDY24106 | Canola | nucleus | 13.98 | 7.99 |
| CDY46642 | Canola | nucleus | 9.75 | 7.96 |
| CDY21356 | Canola | nucleus | 9.75 | 7.93 |
| CDY06947 | Canola | nucleus | 14.41 | 7.91 |
| CDX79253 | Canola | nucleus | 9.32 | 7.86 |
| CDY13782 | Canola | nucleus | 10.17 | 7.82 |
| CDX68024 | Canola | nucleus | 9.32 | 7.77 |
| CDX88432 | Canola | nucleus | 9.32 | 7.75 |
| CDX87460 | Canola | nucleus | 9.32 | 7.72 |
| CDY27186 | Canola | nucleus | 14.41 | 7.57 |
| CDX87594 | Canola | nucleus | 10.17 | 7.5 |
| CDX72106 | Canola | nucleus | 14.41 | 7.47 |
| CDX76950 | Canola | nucleus | 9.75 | 7.47 |
| CDY57580 | Canola | nucleus | 13.98 | 7.45 |
| CDY40554 | Canola | nucleus | 20.34 | 7.32 |
| CDY67263 | Canola | nucleus | 9.75 | 7.01 |
| CDY00446 | Canola | nucleus | 9.75 | 6.76 |
| CDX74070 | Canola | cytosol | 9.75 | 6.39 |
| CDY08023 | Canola | nucleus | 9.75 | 6.39 |
| CDY13339 | Canola | mitochondrion | 4.24 | 5.95 |
| CDX76015 | Canola | nucleus | 7.63 | 5.9 |
| CDY24657 | Canola | nucleus | 8.47 | 5.88 |
| CDY05301 | Canola | nucleus | 8.47 | 5.7 |
| CDY15850 | Canola | nucleus | 8.9 | 5.68 |
| CDY47382 | Canola | golgi, plastid | 8.9 | 5.05 |
| CDY21399 | Canola | mitochondrion | 2.12 | 3.45 |
Protein Annotations
| EnsemblPlants:CDX69279 | EnsemblPlantsGene:GSBRNA2T00131099001 | Gene3D:3.30.70.330 | GO:A0A078BZ73 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR45519 | PFscan:PS50102 | ProteinID:CDX69279 | ProteinID:CDX69279.1 | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI0004EDCF78 | MapMan:35.2 | : | : | : | : |
Description
BnaC01g01740D
Coordinates
chrLK031789:-:3863642..3864884
Molecular Weight (calculated)
26112.5 Da
IEP (calculated)
8.845
GRAVY (calculated)
-0.175
Length
236 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLPDNKKTK CLSLPRVANR GAAMDGESLN AGDRSTGRSR GFGYVTFASS QDAKVCSSFV SVGRCMLIPL AEPGRDERQP AKKATRIFVA RIPPSVSESD
101: FRSVGSFLAY SFVVIFLLRD HKWKQHRGIG FITFATSDSV EDLMEDTHHL GGTTVAVDRA TPKEDGIFVD FRELETKEQP LMIFATTLGG LAVFKTLTFQ
201: RTQREVDIEV SDSLPLLKMV LQIVYPGDLM KSVDKR
101: FRSVGSFLAY SFVVIFLLRD HKWKQHRGIG FITFATSDSV EDLMEDTHHL GGTTVAVDRA TPKEDGIFVD FRELETKEQP LMIFATTLGG LAVFKTLTFQ
201: RTQREVDIEV SDSLPLLKMV LQIVYPGDLM KSVDKR
001: MERKLVVLGI PWDIDSDGLK DYMSKFGDLE DCIVMKDRST GRSRGFGYVT FASAEDAKNA LKGEHFLGNR ILEVKVATPK EEMRQPAKKV TRIFVARIPS
101: SVSESDFRSH FERYGEITDL YMPKDYNSKQ HRGIGFITFS SADSVEDLME DTHDLGGTTV AVDRATPKED DHPPRPPPVA RMSRPPVAIA GGFGAPGGYG
201: AYDAYISAAT RYAALGAPTL YDNPATFYGR GEPTTRGIGN KIFVGRLPQE ASVDDLRDYF GRFGHIQDAY IPKDPKRSGH RGFGFVTFAE NGVADRVARR
301: SHEICGQEVA IDSATPLDEA GPSAGASSML SSSRPEYFGG YGGPMRAFGR MYGGMSLDDW GYGMPNARPS RPDRRYRPY
101: SVSESDFRSH FERYGEITDL YMPKDYNSKQ HRGIGFITFS SADSVEDLME DTHDLGGTTV AVDRATPKED DHPPRPPPVA RMSRPPVAIA GGFGAPGGYG
201: AYDAYISAAT RYAALGAPTL YDNPATFYGR GEPTTRGIGN KIFVGRLPQE ASVDDLRDYF GRFGHIQDAY IPKDPKRSGH RGFGFVTFAE NGVADRVARR
301: SHEICGQEVA IDSATPLDEA GPSAGASSML SSSRPEYFGG YGGPMRAFGR MYGGMSLDDW GYGMPNARPS RPDRRYRPY
Arabidopsis Description
AT4g36960/C7A10_400 [Source:UniProtKB/TrEMBL;Acc:Q94AC3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.