Factsheet for VIT_07s0031g00600.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77004	Soybean	nucleus	82.73	82.04
KRH28467	Soybean	cytosol	82.73	81.37
GSMUA_Achr4P24260_001	Banana	cytosol	72.7	79.33
PGSC0003DMT400010280	Potato	cytosol	81.34	78.71
Solyc02g090910.2.1	Tomato	nucleus	81.06	77.39
GSMUA_Achr2P14710_001	Banana	cytosol	76.6	76.6
AT4G36960.2	Thale cress	cytosol	74.93	70.98
Os01t0945800-01	Rice	nucleus	71.31	70.52
CDY42724	Canola	cytosol	74.37	70.45
Zm00001d011885_P008	Maize	cytosol	70.19	70.0
CDY69852	Canola	cytosol	74.37	69.9
KXG34100	Sorghum	cytosol	69.36	69.17
Os05t0376000-00	Rice	cytosol	39.55	67.94
HORVU1Hr1G057660.1	Barley	cytosol	68.52	67.58
TraesCS1A01G234200.1	Wheat	cytosol	68.52	67.4
TraesCS1B01G249300.1	Wheat	cytosol	68.52	67.4
TraesCS1D01G237800.3	Wheat	cytosol	68.25	67.31
Bra017802.1-P	Field mustard	nucleus	73.82	64.95
TraesCS3A01G485000.1	Wheat	cytosol	59.89	57.64
TraesCS3B01G532600.3	Wheat	cytosol	59.61	57.37
TraesCS3D01G480300.1	Wheat	cytosol	59.33	57.1
HORVU3Hr1G105930.10	Barley	cytoskeleton, cytosol, nucleus	58.22	56.33
Zm00001d042133_P003	Maize	cytosol	57.1	51.51
CDX69279	Canola	nucleus	24.79	37.71
VIT_09s0002g02350.t01	Wine grape	cytosol	27.58	28.05
VIT_12s0057g01280.t01	Wine grape	nucleus	18.11	25.19
VIT_14s0066g00480.t01	Wine grape	nucleus	26.18	25.0
VIT_12s0057g00480.t01	Wine grape	nucleus	33.15	24.9
VIT_18s0117g00150.t01	Wine grape	nucleus	24.51	24.51
VIT_19s0015g00920.t01	Wine grape	nucleus	23.12	23.85
VIT_07s0005g03980.t01	Wine grape	nucleus	28.69	23.73
VIT_19s0090g01660.t01	Wine grape	nucleus	31.2	23.43
VIT_05s0049g01660.t01	Wine grape	nucleus	30.08	23.28
VIT_18s0089g00920.t01	Wine grape	nucleus	13.37	17.84
VIT_18s0122g00660.t01	Wine grape	nucleus, plastid	13.65	17.19
VIT_15s0048g02630.t01	Wine grape	nucleus	12.53	16.85
VIT_18s0001g05840.t01	Wine grape	nucleus	12.53	16.3
VIT_18s0001g08640.t01	Wine grape	nucleus	21.17	16.14
VIT_19s0014g01570.t01	Wine grape	nucleus	19.78	15.81
VIT_13s0019g03610.t01	Wine grape	nucleus	10.59	15.38
VIT_07s0031g01290.t01	Wine grape	nucleus	16.16	14.8
VIT_08s0007g06300.t01	Wine grape	nucleus	12.81	13.45
VIT_08s0056g00690.t01	Wine grape	nucleus	16.99	13.17
VIT_06s0009g01190.t01	Wine grape	nucleus	16.43	12.91
VIT_06s0009g01180.t01	Wine grape	mitochondrion, nucleus, plastid	16.99	11.78
VIT_16s0098g01050.t01	Wine grape	endoplasmic reticulum, extracellular	8.91	11.0

Protein Annotations

EntrezGene:100247389	wikigene:100247389	Gene3D:3.30.70.330	MapMan:35.1	ProteinID:CBI21423	ProteinID:CBI21423.3
UniProt:D7SVX4	EMBL:FN595233	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	EntrezGene:LOC100247389	wikigene:LOC100247389	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR45519	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	TIGR:TC63532	UniParc:UPI0001BE191E	ArrayExpress:VIT_07s0031g00600	EnsemblPlantsGene:VIT_07s0031g00600	EnsemblPlants:VIT_07s0031g00600.t01
unigene:Vvi.11329	RefSeq:XP_002282572	RefSeq:XP_002282572.2	RefSeq:XP_003632540	RefSeq:XP_003632540.1	RefSeq:XP_010652809.1

Description

No Description!

Coordinates

chr7:+:16780019..16789552

Molecular Weight (calculated)

39764.0 Da

IEP (calculated)

7.757

GRAVY (calculated)

-0.452

Length

359 amino acids

Sequence
(BLAST)

001: MDNKLVVLGI PWDVDTDGLR DYMSKFGELK DVIVMKERST GRSRGFGYVT FGSVEDAKKV LSSEHFLGNR MLEVKVATPK EEMMRAPIKK VTRIFVARIP
101: DSVNEAAFRS YFETYGEITD LYMPKDHGSK GHRGIGFITF ASAESVDNLM VETHELGGSA VVVDRATPKE EEFRPVSRVP QGGYGAYNAY ITAATRYAAL
201: GAPTLYDHPG SVYGRGESTR AMGKKIFVGR LPQEASAEDL RQYFGRFGRI LDVYVPKDPK RSGHRGFGFV TFAEDGVADR VSRRSHEICG QQVAIDSATP
301: LDDAGSSGNF MMDSAEPFGG FGGPMRTYGR MYGSLDFDDW GYGIGGGRPS RADWRYRPY

Best Arabidopsis Sequence Match ( AT4G36960.2 )
(BLAST)

001: MERKLVVLGI PWDIDSDGLK DYMSKFGDLE DCIVMKDRST GRSRGFGYVT FASAEDAKNA LKGEHFLGNR ILEVKVATPK EEMRQPAKKV TRIFVARIPS
101: SVSESDFRSH FERYGEITDL YMPKDYNSKQ HRGIGFITFS SADSVEDLME DTHDLGGTTV AVDRATPKED DHPPRPPPVA RMSRPPVAIA GGFGAPGGYG
201: AYDAYISAAT RYAALGAPTL YDNPATFYGR GEPTTRGIGN KIFVGRLPQE ASVDDLRDYF GRFGHIQDAY IPKDPKRSGH RGFGFVTFAE NGVADRVARR
301: SHEICGQEVA IDSATPLDEA GPSAGASSML SSSRPEYFGG YGGPMRAFGR MYGGMSLDDW GYGMPNARPS RPDRRYRPY

Arabidopsis Description

AT4g36960/C7A10_400 [Source:UniProtKB/TrEMBL;Acc:Q94AC3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.