Factsheet for Solyc02g090910.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400010280	Potato	cytosol	97.61	98.92
VIT_07s0031g00600.t01	Wine grape	cytosol	77.39	81.06
KRH77004	Soybean	nucleus	75.0	77.9
KRH28467	Soybean	cytosol	74.73	76.99
GSMUA_Achr4P24260_001	Banana	cytosol	66.49	75.99
GSMUA_Achr2P14710_001	Banana	cytosol	69.95	73.26
AT4G36960.2	Thale cress	cytosol	70.21	69.66
Zm00001d011885_P008	Maize	cytosol	66.49	69.44
CDY42724	Canola	cytosol	69.95	69.39
Os01t0945800-01	Rice	nucleus	66.76	69.15
CDY69852	Canola	cytosol	69.95	68.85
KXG34100	Sorghum	cytosol	65.43	68.33
Os05t0376000-00	Rice	cytosol	35.37	63.64
Bra017802.1-P	Field mustard	nucleus	68.88	63.48
HORVU1Hr1G057660.1	Barley	cytosol	61.17	63.19
TraesCS1B01G249300.1	Wheat	cytosol	60.9	62.74
TraesCS1D01G237800.3	Wheat	cytosol	60.64	62.64
TraesCS1A01G234200.1	Wheat	cytosol	60.64	62.47
TraesCS3A01G485000.1	Wheat	cytosol	56.12	56.57
TraesCS3B01G532600.3	Wheat	cytosol	55.85	56.3
TraesCS3D01G480300.1	Wheat	cytosol	55.59	56.03
HORVU3Hr1G105930.10	Barley	cytoskeleton, cytosol, nucleus	54.79	55.53
Zm00001d042133_P003	Maize	cytosol	55.59	52.51
CDX69279	Canola	nucleus	24.47	38.98
Solyc03g121710.2.1	Tomato	nucleus	19.95	27.88
Solyc07g045240.2.1	Tomato	nucleus	23.14	25.36
Solyc04g077520.2.1	Tomato	nucleus	22.61	24.93
Solyc04g014820.2.1	Tomato	cytosol	16.76	23.51
Solyc02g093340.2.1	Tomato	nucleus	24.2	23.39
Solyc06g062740.1.1	Tomato	cytosol	12.23	23.35
Solyc03g005680.2.1	Tomato	nucleus	26.33	23.18
Solyc09g072790.2.1	Tomato	nucleus	23.94	22.84
Solyc09g090520.2.1	Tomato	nucleus	27.66	21.89
Solyc07g048030.2.1	Tomato	nucleus	24.73	21.28
Solyc11g012470.1.1	Tomato	nucleus	23.67	20.79
Solyc12g006180.1.1	Tomato	nucleus	24.2	20.78
Solyc06g062730.1.1	Tomato	nucleus	19.95	20.44
Solyc12g014600.1.1	Tomato	nucleus	23.67	20.37
Solyc11g044470.1.1	Tomato	mitochondrion, nucleus, plastid	14.1	20.31
Solyc12g035280.1.1	Tomato	cytosol, nucleus, plastid	19.95	20.22
Solyc10g006050.2.1	Tomato	nucleus	23.14	20.09
Solyc04g082770.2.1	Tomato	cytosol, extracellular, nucleus, plastid	11.7	18.26
Solyc02g064540.1.1	Tomato	nucleus	17.29	17.57
Solyc04g049920.2.1	Tomato	nucleus	10.37	16.18
Solyc02g082270.2.1	Tomato	nucleus	11.7	15.6
Solyc04g074310.2.1	Tomato	nucleus	11.97	15.36
Solyc02g021560.2.1	Tomato	nucleus	17.02	14.85
Solyc12g014210.1.1	Tomato	nucleus	12.23	13.73
Solyc04g011560.2.1	Tomato	nucleus	16.49	13.19
Solyc01g008970.2.1	Tomato	nucleus	13.03	13.03
Solyc10g081330.1.1	Tomato	nucleus	13.56	12.23

Protein Annotations

EnsemblPlants:Solyc02g090910.2.1	EnsemblPlantsGene:Solyc02g090910.2	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR45519	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI0002767603	UniProt:K4BCP0	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr2:-:52386457..52393655

Molecular Weight (calculated)

41161.6 Da

IEP (calculated)

7.667

GRAVY (calculated)

-0.580

Length

376 amino acids

Sequence
(BLAST)

001: MSEKKLVVLG IPWDVDTEGL REYMIKYGDL EDCIVMKERA TGRSRGFGYV TFATVEDAKN ALSKEHFLGN RMLEVKVATP KEEMRAPAKK VTRIFVARIP
101: PSVSEATFRG YFEKYGEITD LYMPKDPSTK GHRGIGFITF ANAESVDDLM SDTHELGGST IVVDRATPKE EDFRPVSRMS QSGGGYGAYN AYMSATTRYG
201: ALGAPTLYDH PSSMYGRGGG GGGGGGGGFP SRGGLGQKIF VGRLPQEATT EDLRQYFGRF GRVLDVYVPK DPRRPGHRGF GFVTFADDGV ADRVSRRPHE
301: ICGHQVAIDS ATPLDDAGPS NNYMMDPPPP APEAYGGYGG PMRTYGRMYG GLDYDDWGYG LGGGRPSRSD MRYRPY

Best Arabidopsis Sequence Match ( AT4G36960.2 )
(BLAST)

001: MERKLVVLGI PWDIDSDGLK DYMSKFGDLE DCIVMKDRST GRSRGFGYVT FASAEDAKNA LKGEHFLGNR ILEVKVATPK EEMRQPAKKV TRIFVARIPS
101: SVSESDFRSH FERYGEITDL YMPKDYNSKQ HRGIGFITFS SADSVEDLME DTHDLGGTTV AVDRATPKED DHPPRPPPVA RMSRPPVAIA GGFGAPGGYG
201: AYDAYISAAT RYAALGAPTL YDNPATFYGR GEPTTRGIGN KIFVGRLPQE ASVDDLRDYF GRFGHIQDAY IPKDPKRSGH RGFGFVTFAE NGVADRVARR
301: SHEICGQEVA IDSATPLDEA GPSAGASSML SSSRPEYFGG YGGPMRAFGR MYGGMSLDDW GYGMPNARPS RPDRRYRPY

Arabidopsis Description

AT4g36960/C7A10_400 [Source:UniProtKB/TrEMBL;Acc:Q94AC3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.