Subcellular Localization
min:
: max
Winner_takes_all: plastid, extracellular, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 3
- cytosol 2
- mitochondrion 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400025900 | Potato | nucleus | 76.35 | 64.11 |
| GSMUA_Achr4P09830_001 | Banana | mitochondrion | 35.27 | 56.29 |
| GSMUA_Achr9P14920_001 | Banana | plastid | 37.34 | 50.85 |
| HORVU6Hr1G070140.3 | Barley | plastid | 32.37 | 50.0 |
| GSMUA_Achr3P06540_001 | Banana | nucleus, plastid | 32.78 | 49.69 |
| AT5G53720.1 | Thale cress | cytosol | 20.33 | 49.0 |
| HORVU6Hr1G070150.1 | Barley | plastid | 33.61 | 48.5 |
| CDY51790 | Canola | cytosol | 20.75 | 46.73 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 21.58 | 46.43 |
| Os02t0755400-01 | Rice | plastid | 33.61 | 46.02 |
| GSMUA_Achr8P24330_001 | Banana | nucleus, plastid | 54.36 | 45.17 |
| Zm00001d052212_P001 | Maize | nucleus | 29.88 | 44.72 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 41.91 | 41.91 |
| Os02t0714000-01 | Rice | nucleus, plastid | 48.96 | 41.12 |
| Solyc02g082270.2.1 | Tomato | nucleus | 46.47 | 39.72 |
| TraesCS6B01G306600.1 | Wheat | plastid | 46.47 | 39.3 |
| TraesCS6D01G258900.4 | Wheat | plastid | 46.47 | 38.89 |
| TraesCS7A01G398200.1 | Wheat | cytosol, mitochondrion, nucleus | 45.64 | 38.87 |
| OQU85520 | Sorghum | nucleus, plastid | 47.3 | 38.64 |
| TraesCS7B01G299000.1 | Wheat | mitochondrion, nucleus, plastid | 45.64 | 38.6 |
| TraesCS6A01G278300.3 | Wheat | plastid | 46.47 | 38.36 |
| TraesCS7D01G392500.1 | Wheat | cytosol, nucleus, plastid | 45.23 | 37.98 |
| Os06t0622900-01 | Rice | cytosol, mitochondrion, nucleus | 43.15 | 37.82 |
| GSMUA_Achr8P23460_001 | Banana | nucleus | 36.51 | 37.29 |
| Zm00001d036789_P001 | Maize | cytosol, mitochondrion, nucleus | 42.74 | 36.92 |
| Solyc11g044470.1.1 | Tomato | mitochondrion, nucleus, plastid | 39.83 | 36.78 |
| EER90058 | Sorghum | plastid | 43.57 | 36.71 |
| Solyc04g074310.2.1 | Tomato | nucleus | 43.57 | 35.84 |
| HORVU7Hr1G093450.6 | Barley | nucleus | 43.57 | 35.71 |
| KRH53608 | Soybean | nucleus | 35.27 | 34.55 |
| GSMUA_Achr5P05400_001 | Banana | mitochondrion | 37.76 | 34.47 |
| KRH64318 | Soybean | nucleus | 36.51 | 34.24 |
| TraesCS4D01G225900.1 | Wheat | nucleus | 35.27 | 34.14 |
| TraesCS4A01G068100.1 | Wheat | nucleus | 34.85 | 33.73 |
| HORVU6Hr1G070170.1 | Barley | mitochondrion, nucleus, plastid | 46.47 | 33.73 |
| Solyc04g049920.2.1 | Tomato | nucleus | 33.61 | 33.61 |
| AT5G53680.1 | Thale cress | cytosol | 23.24 | 33.14 |
| HORVU4Hr1G063360.1 | Barley | nucleus | 35.27 | 31.02 |
| AT5G11412.1 | Thale cress | endoplasmic reticulum | 22.41 | 30.86 |
| TraesCS4B01G225300.1 | Wheat | nucleus | 34.85 | 30.77 |
| Zm00001d051627_P002 | Maize | plastid | 45.64 | 29.89 |
| Zm00001d017829_P002 | Maize | plastid | 42.74 | 29.86 |
| Zm00001d046716_P001 | Maize | nucleus | 44.4 | 29.72 |
| HORVU6Hr1G078060.1 | Barley | plastid | 38.17 | 29.11 |
| TraesCS7D01G180800.1 | Wheat | nucleus | 36.1 | 28.9 |
| TraesCS6D01G297300.1 | Wheat | plastid | 37.34 | 28.85 |
| TraesCS7A01G178700.2 | Wheat | nucleus | 36.1 | 28.62 |
| TraesCS6B01G348100.1 | Wheat | plastid | 36.93 | 28.62 |
| HORVU7Hr1G036920.2 | Barley | mitochondrion, nucleus | 35.27 | 28.43 |
| TraesCS7B01G084600.1 | Wheat | nucleus | 35.27 | 28.33 |
| KXG30724 | Sorghum | plastid | 35.68 | 27.74 |
| Zm00001d018103_P002 | Maize | plasma membrane | 36.1 | 27.36 |
| Zm00001d037209_P001 | Maize | plastid | 37.34 | 27.11 |
| Os06t0220600-01 | Rice | plastid | 38.17 | 26.82 |
| OQU76075 | Sorghum | plastid | 36.1 | 24.65 |
| AT3G06970.1 | Thale cress | nucleus | 24.48 | 18.61 |
| TraesCS6A01G318100.1 | Wheat | nucleus | 37.34 | 18.48 |
| Bra029612.1-P | Field mustard | nucleus | 21.16 | 17.77 |
| Solyc03g121710.2.1 | Tomato | nucleus | 19.09 | 17.1 |
| Solyc06g062740.1.1 | Tomato | cytosol | 12.86 | 15.74 |
| Solyc12g014210.1.1 | Tomato | nucleus | 21.58 | 15.52 |
| CDY24657 | Canola | nucleus | 21.58 | 15.29 |
| CDY05301 | Canola | nucleus | 21.99 | 15.1 |
| CDY08023 | Canola | nucleus | 22.41 | 15.0 |
| Bra001228.1-P | Field mustard | cytosol | 21.99 | 14.64 |
| CDX74070 | Canola | cytosol | 21.58 | 14.44 |
| Solyc07g045240.2.1 | Tomato | nucleus | 19.92 | 13.99 |
| Solyc02g021560.2.1 | Tomato | nucleus | 24.48 | 13.69 |
| Solyc01g008970.2.1 | Tomato | nucleus | 19.92 | 12.77 |
| Solyc09g072790.2.1 | Tomato | nucleus | 20.33 | 12.44 |
| Solyc02g093340.2.1 | Tomato | nucleus | 19.5 | 12.08 |
| Solyc03g005680.2.1 | Tomato | nucleus | 21.16 | 11.94 |
| Solyc10g081330.1.1 | Tomato | nucleus | 20.33 | 11.75 |
| Solyc02g090910.2.1 | Tomato | nucleus | 18.26 | 11.7 |
| Solyc09g090520.2.1 | Tomato | nucleus | 21.99 | 11.16 |
| Solyc04g077520.2.1 | Tomato | nucleus | 15.35 | 10.85 |
| Solyc02g064540.1.1 | Tomato | nucleus | 15.77 | 10.27 |
| Solyc04g011560.2.1 | Tomato | nucleus | 19.92 | 10.21 |
| Solyc06g062730.1.1 | Tomato | nucleus | 15.35 | 10.08 |
| Solyc04g014820.2.1 | Tomato | cytosol | 11.2 | 10.07 |
| Solyc12g035280.1.1 | Tomato | cytosol, nucleus, plastid | 15.35 | 9.97 |
| Solyc12g006180.1.1 | Tomato | nucleus | 14.94 | 8.22 |
| Solyc07g048030.2.1 | Tomato | nucleus | 14.52 | 8.01 |
| Solyc10g006050.2.1 | Tomato | nucleus | 14.11 | 7.85 |
| Solyc12g014600.1.1 | Tomato | nucleus | 13.69 | 7.55 |
| Solyc11g012470.1.1 | Tomato | nucleus | 12.45 | 7.01 |
Protein Annotations
| EnsemblPlants:Solyc04g082770.2.1 | EnsemblPlantsGene:Solyc04g082770.2 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR44828 | PANTHER:PTHR44828:SF1 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI000276687F | UniProt:K4BW04 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr4:-:66324324..66328011
Molecular Weight (calculated)
26376.5 Da
IEP (calculated)
8.925
GRAVY (calculated)
-0.410
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYQQQPPAQ GSGSSAAGSG VPFFNSPFGD TTFTKVFVGG LAWETQSDTL RRFFEQFGEI LEAVVITDKN TGRSKGYGFV TFRDPESTRR ACADPAPIID
101: GRRANCNLAS LGRPRPSVQF GRLRSPTPFP AGLPAARGAY AGSFGYQQPV SYGYQQGLMY SPYGYATYGT DYVYPQGVYN PYGGLCSART SDSSVWWARC
201: QCNDSFIHSN YSSTISNRCR SACYTTATVY TTYSFSSIYA R
101: GRRANCNLAS LGRPRPSVQF GRLRSPTPFP AGLPAARGAY AGSFGYQQPV SYGYQQGLMY SPYGYATYGT DYVYPQGVYN PYGGLCSART SDSSVWWARC
201: QCNDSFIHSN YSSTISNRCR SACYTTATVY TTYSFSSIYA R
001: MAYQPVPGSG FHYLNSPFGD TTFTKVFVGG LAWETQSETL RQHFEQYGEI LEAVVIADKN TGRSKGYGFV TFRDPEAARR ACADPTPIID GRRANCNLAS
101: LGRPRPPLPY AVIPNMPGRL RPASPYIGNV QGPRGSLIGN YPYQQPLPYN YQQGVVYPYG VTAYGPEYMY SQSQGLYSPY MGQQYLQVYG VPGAVNSPVY
201: QYGQLSQTIP NGHGYTAVQG YSVPGSHILQ LGGPTVSTMT TSSMPALQAP YPSGIPGPAP VQSHIIVHSP QFMQSTASDQ TTSYS
101: LGRPRPPLPY AVIPNMPGRL RPASPYIGNV QGPRGSLIGN YPYQQPLPYN YQQGVVYPYG VTAYGPEYMY SQSQGLYSPY MGQQYLQVYG VPGAVNSPVY
201: QYGQLSQTIP NGHGYTAVQG YSVPGSHILQ LGGPTVSTMT TSSMPALQAP YPSGIPGPAP VQSHIIVHSP QFMQSTASDQ TTSYS
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I2E4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.