Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74070 | Canola | cytosol | 83.33 | 83.33 |
| Bra001228.1-P | Field mustard | cytosol | 83.61 | 83.15 |
| CDY05301 | Canola | nucleus | 46.94 | 48.15 |
| CDY24657 | Canola | nucleus | 45.28 | 47.94 |
| CDY51790 | Canola | cytosol | 13.89 | 46.73 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 13.89 | 44.64 |
| AT3G06970.1 | Thale cress | nucleus | 35.83 | 40.69 |
| GSMUA_Achr4P09830_001 | Banana | mitochondrion | 13.06 | 31.13 |
| GSMUA_Achr3P06540_001 | Banana | nucleus, plastid | 13.06 | 29.56 |
| HORVU6Hr1G070140.3 | Barley | plastid | 12.22 | 28.21 |
| HORVU6Hr1G070150.1 | Barley | plastid | 13.06 | 28.14 |
| Zm00001d052212_P001 | Maize | nucleus | 12.5 | 27.95 |
| GSMUA_Achr9P14920_001 | Banana | plastid | 13.61 | 27.68 |
| Os02t0755400-01 | Rice | plastid | 12.78 | 26.14 |
| KRH64318 | Soybean | nucleus | 16.67 | 23.35 |
| KRH53608 | Soybean | nucleus | 15.83 | 23.17 |
| CDX73279 | Canola | cytosol | 15.28 | 22.73 |
| Solyc04g082770.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 15.0 | 22.41 |
| GSMUA_Achr8P23460_001 | Banana | nucleus | 14.44 | 22.03 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 14.72 | 21.99 |
| CDY69197 | Canola | nucleus | 13.61 | 21.78 |
| TraesCS4A01G068100.1 | Wheat | nucleus | 15.0 | 21.69 |
| TraesCS4D01G225900.1 | Wheat | nucleus | 15.0 | 21.69 |
| CDY31508 | Canola | nucleus | 15.0 | 21.6 |
| CDY31859 | Canola | nucleus | 14.17 | 21.16 |
| CDY04769 | Canola | nucleus | 13.89 | 21.1 |
| CDY25759 | Canola | nucleus | 14.44 | 20.88 |
| GSMUA_Achr5P05400_001 | Banana | mitochondrion | 15.28 | 20.83 |
| CDY01349 | Canola | nucleus | 13.89 | 20.75 |
| CDX96615 | Canola | nucleus | 14.44 | 20.63 |
| CDY33653 | Canola | nucleus | 14.44 | 20.55 |
| GSMUA_Achr8P24330_001 | Banana | nucleus, plastid | 16.39 | 20.34 |
| CDY29496 | Canola | nucleus | 14.72 | 20.31 |
| Os02t0714000-01 | Rice | nucleus, plastid | 16.11 | 20.21 |
| PGSC0003DMT400025900 | Potato | nucleus | 16.11 | 20.21 |
| TraesCS6D01G258900.4 | Wheat | plastid | 16.11 | 20.14 |
| TraesCS4B01G225300.1 | Wheat | nucleus | 14.72 | 19.41 |
| OQU85520 | Sorghum | nucleus, plastid | 15.83 | 19.32 |
| TraesCS6B01G306600.1 | Wheat | plastid | 15.28 | 19.3 |
| CDX88283 | Canola | nucleus | 15.0 | 19.29 |
| TraesCS6A01G278300.3 | Wheat | plastid | 15.56 | 19.18 |
| CDX88432 | Canola | nucleus | 15.0 | 19.01 |
| HORVU4Hr1G063360.1 | Barley | nucleus | 14.44 | 18.98 |
| CDY41556 | Canola | nucleus | 15.28 | 18.97 |
| CDX87460 | Canola | nucleus | 15.0 | 18.95 |
| Os06t0622900-01 | Rice | cytosol, mitochondrion, nucleus | 14.44 | 18.91 |
| CDY02889 | Canola | nucleus | 11.39 | 18.89 |
| CDX73451 | Canola | cytosol | 12.78 | 18.4 |
| CDY46642 | Canola | nucleus | 14.72 | 18.34 |
| Zm00001d036789_P001 | Maize | cytosol, mitochondrion, nucleus | 14.17 | 18.28 |
| EER90058 | Sorghum | plastid | 14.44 | 18.18 |
| TraesCS7A01G398200.1 | Wheat | cytosol, mitochondrion, nucleus | 14.17 | 18.02 |
| CDY21356 | Canola | nucleus | 14.44 | 17.93 |
| TraesCS7B01G299000.1 | Wheat | mitochondrion, nucleus, plastid | 14.17 | 17.89 |
| TraesCS7D01G392500.1 | Wheat | cytosol, nucleus, plastid | 14.17 | 17.77 |
| HORVU7Hr1G093450.6 | Barley | nucleus | 14.44 | 17.69 |
| CDY64698 | Canola | nucleus | 12.78 | 17.62 |
| CDX80046 | Canola | nucleus | 15.28 | 17.41 |
| CDY41557 | Canola | nucleus | 15.28 | 17.41 |
| Zm00001d017829_P002 | Maize | plastid | 16.67 | 17.39 |
| CDX78261 | Canola | nucleus | 12.5 | 17.37 |
| CDX68024 | Canola | nucleus | 13.61 | 17.31 |
| KXG30724 | Sorghum | plastid | 14.72 | 17.1 |
| Zm00001d018103_P002 | Maize | plasma membrane | 15.0 | 16.98 |
| CDX87594 | Canola | nucleus | 15.0 | 16.88 |
| CDY48016 | Canola | nucleus | 15.28 | 16.87 |
| CDX79253 | Canola | nucleus | 13.06 | 16.79 |
| CDY27523 | Canola | nucleus | 15.0 | 16.72 |
| HORVU6Hr1G070170.1 | Barley | mitochondrion, nucleus, plastid | 15.28 | 16.57 |
| HORVU7Hr1G036920.2 | Barley | mitochondrion, nucleus | 13.61 | 16.39 |
| TraesCS6D01G297300.1 | Wheat | plastid | 14.17 | 16.35 |
| TraesCS6B01G348100.1 | Wheat | plastid | 13.89 | 16.08 |
| TraesCS7D01G180800.1 | Wheat | nucleus | 13.33 | 15.95 |
| CDY00446 | Canola | nucleus | 15.0 | 15.88 |
| CDY67263 | Canola | nucleus | 14.44 | 15.85 |
| HORVU6Hr1G078060.1 | Barley | plastid | 13.89 | 15.82 |
| TraesCS7A01G178700.2 | Wheat | nucleus | 13.33 | 15.79 |
| Zm00001d051627_P002 | Maize | plastid | 15.83 | 15.49 |
| TraesCS7B01G084600.1 | Wheat | nucleus | 12.78 | 15.33 |
| Zm00001d046716_P001 | Maize | nucleus | 15.28 | 15.28 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 16.67 | 14.46 |
| OQU76075 | Sorghum | plastid | 13.89 | 14.16 |
| Zm00001d037209_P001 | Maize | plastid | 13.06 | 14.16 |
| Os06t0220600-01 | Rice | plastid | 13.33 | 13.99 |
| CDY12068 | Canola | nucleus | 13.89 | 13.97 |
| CDX77783 | Canola | nucleus | 16.39 | 13.88 |
| CDX90262 | Canola | nucleus | 14.72 | 13.87 |
| CDY50131 | Canola | nucleus | 14.72 | 13.87 |
| CDX76015 | Canola | nucleus | 11.39 | 13.44 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 15.28 | 13.38 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 12.78 | 13.29 |
| CDY41059 | Canola | nucleus | 15.56 | 13.11 |
| CDY13782 | Canola | nucleus | 11.11 | 13.03 |
| CDY26229 | Canola | nucleus | 13.33 | 12.94 |
| CDY48318 | Canola | nucleus | 13.33 | 12.9 |
| CDY23739 | Canola | nucleus | 13.61 | 12.79 |
| CDY17173 | Canola | nucleus | 13.33 | 12.73 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 12.78 | 12.67 |
| CDY42724 | Canola | cytosol | 13.33 | 12.66 |
| CDX76950 | Canola | nucleus | 10.83 | 12.66 |
| CDY28918 | Canola | mitochondrion | 16.94 | 12.6 |
| CDY67299 | Canola | nucleus | 13.33 | 12.6 |
| CDY69852 | Canola | cytosol | 13.33 | 12.57 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 12.5 | 12.36 |
| CDY06947 | Canola | nucleus | 14.72 | 12.33 |
| CDX75170 | Canola | extracellular | 5.56 | 12.27 |
| CDY25867 | Canola | nucleus | 13.61 | 12.1 |
| CDY37724 | Canola | nucleus | 10.83 | 12.07 |
| CDY26001 | Canola | nucleus | 13.61 | 12.04 |
| CDY27186 | Canola | nucleus | 15.0 | 12.03 |
| CDY55846 | Canola | nucleus | 13.33 | 11.97 |
| CDY57580 | Canola | nucleus | 14.72 | 11.96 |
| CDX72106 | Canola | nucleus | 15.0 | 11.87 |
| CDY24106 | Canola | nucleus | 13.61 | 11.86 |
| CDX79527 | Canola | nucleus | 13.33 | 11.82 |
| CDX84689 | Canola | nucleus | 13.33 | 11.76 |
| CDY07975 | Canola | nucleus | 15.28 | 11.68 |
| CDX74030 | Canola | nucleus | 15.28 | 11.65 |
| CDY24201 | Canola | nucleus | 11.67 | 11.6 |
| CDY43360 | Canola | nucleus | 11.67 | 11.6 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 11.67 | 11.57 |
| CDY66272 | Canola | nucleus | 15.56 | 11.45 |
| CDY13339 | Canola | mitochondrion | 5.28 | 11.31 |
| CDY35966 | Canola | nucleus | 15.28 | 11.13 |
| CDY22136 | Canola | nucleus | 15.0 | 11.11 |
| CDY36753 | Canola | nucleus | 13.33 | 11.03 |
| CDY25957 | Canola | nucleus | 16.39 | 10.67 |
| CDY15850 | Canola | nucleus | 10.83 | 10.54 |
| CDY11989 | Canola | nucleus | 12.5 | 10.42 |
| CDY47382 | Canola | golgi, plastid | 11.67 | 10.1 |
| TraesCS6A01G318100.1 | Wheat | nucleus | 13.61 | 10.06 |
| CDY46690 | Canola | nucleus | 11.67 | 9.81 |
| CDX69279 | Canola | nucleus | 6.39 | 9.75 |
| CDX94301 | Canola | nucleus | 11.94 | 9.73 |
| CDX92807 | Canola | nucleus | 11.94 | 9.56 |
| CDX89316 | Canola | endoplasmic reticulum | 11.67 | 9.4 |
| CDY46689 | Canola | nucleus | 11.94 | 9.29 |
| CDY40554 | Canola | nucleus | 16.67 | 9.15 |
| CDY36357 | Canola | nucleus | 11.94 | 7.93 |
| CDY42577 | Canola | nucleus | 11.94 | 7.89 |
| CDX69277 | Canola | mitochondrion | 3.61 | 6.99 |
| CDY21399 | Canola | mitochondrion | 2.5 | 6.21 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078F8G8 | UniProt:A0A078F8G8 | EnsemblPlants:CDY08023 | ProteinID:CDY08023 |
| ProteinID:CDY08023.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00125268001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44374 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EF44B6 | SEG:seg |
Description
BnaC03g35000DBnaC03g35000D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F8G8]
Coordinates
chrLK031982:+:677089..678869
Molecular Weight (calculated)
40728.8 Da
IEP (calculated)
3.937
GRAVY (calculated)
-1.053
Length
360 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQPNQKNNN FKDTKIFVGG LTWRTTTDDL RNFFQVKFGE VIDANVVSEG LPGGKLRSKG YGFVVFRNAE SANTVCQLPW PVIDGRQTNV NMAYIGAKNN
101: TNLSNQNGLL NQAGPSHQYQ NGLFNQAASH QYQLASHNPN QHFPQPYWAP YYGHHPYMYN VPCYSYPTAM VSVQMHQYVL AYRMQRNWER LNNQPSVKVS
201: APPNAPIVEN NEEEADTETD SDQEGEINGE DNDINQDVSD QELEINEEEV DADIEANEEE VDADTEADSD QEGEISGEDN DIEQDVNDQE LEIMSGEEDD
301: NKHEVDVTKQ LGNGVEVTLV CEEEAENTPQ ENRNGHEENG DQEEEGEKQE YIKERAREAI
101: TNLSNQNGLL NQAGPSHQYQ NGLFNQAASH QYQLASHNPN QHFPQPYWAP YYGHHPYMYN VPCYSYPTAM VSVQMHQYVL AYRMQRNWER LNNQPSVKVS
201: APPNAPIVEN NEEEADTETD SDQEGEINGE DNDINQDVSD QELEINEEEV DADIEANEEE VDADTEADSD QEGEISGEDN DIEQDVNDQE LEIMSGEEDD
301: NKHEVDVTKQ LGNGVEVTLV CEEEAENTPQ ENRNGHEENG DQEEEGEKQE YIKERAREAI
001: MSQTNNHDTR VTKIFVGNLT WRTTADDLRR YFEQFGQVVD ANVVSETYPG RSKGYGFITF RDYVSTVRAL QNSKPIIDGR TTNCNLASAG AKQNMNHPNL
101: NGSFNYVIPP HQYQQAPQHV IPYCPPHTWN HVWGQYIYMY NNNPCYYYPT QMIHNRSDFM THLAWHQTNR RPVIISTPPR SSVQTESISE TDQELIADVA
201: HHDNEEAVTK SDSDVDQQKA KNVKGKNIGQ DGDIKQDARD QEEKINDQED SIKQDVDEEQ NKISGIEKVV ENQEVKIMCE QKHGTKQDED VTKEFDCGIE
301: VTHQDKRVFE EVDEDTP
101: NGSFNYVIPP HQYQQAPQHV IPYCPPHTWN HVWGQYIYMY NNNPCYYYPT QMIHNRSDFM THLAWHQTNR RPVIISTPPR SSVQTESISE TDQELIADVA
201: HHDNEEAVTK SDSDVDQQKA KNVKGKNIGQ DGDIKQDARD QEEKINDQED SIKQDVDEEQ NKISGIEKVV ENQEVKIMCE QKHGTKQDED VTKEFDCGIE
301: VTHQDKRVFE EVDEDTP
Arabidopsis Description
RNA recognition motif-containing protein [Source:UniProtKB/TrEMBL;Acc:Q1PES4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.