Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G20880.1 | CDY12358 | AT1G31750.1 | 21798944 |
| AT1G20880.1 | CDY27132 | AT1G31750.1 | 21798944 |
| AT1G20880.1 | CDX87210 | AT5G61380.1 | 21798944 |
| AT1G20880.1 | CDY02151 | AT5G61380.1 | 21798944 |
| AT1G20880.1 | CDY64140 | AT5G61380.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31508 | Canola | nucleus | 92.34 | 96.4 |
| CDY33653 | Canola | nucleus | 86.59 | 89.33 |
| CDX96615 | Canola | nucleus | 85.82 | 88.89 |
| CDY31859 | Canola | nucleus | 79.31 | 85.89 |
| CDY01349 | Canola | nucleus | 78.16 | 84.65 |
| AT1G20880.1 | Thale cress | nucleus | 83.14 | 79.2 |
| CDX88283 | Canola | nucleus | 78.54 | 73.21 |
| CDX87594 | Canola | nucleus | 78.54 | 64.06 |
| KRH51553 | Soybean | nucleus, plastid | 70.11 | 63.99 |
| KRH60871 | Soybean | nucleus, plastid | 68.97 | 62.94 |
| VIT_18s0122g00660.t01 | Wine grape | nucleus, plastid | 68.58 | 62.81 |
| PGSC0003DMT400035478 | Potato | nucleus, plastid | 51.34 | 47.52 |
| Solyc02g082270.2.1 | Tomato | nucleus | 51.34 | 47.52 |
| CDY51790 | Canola | cytosol | 18.01 | 43.93 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 18.77 | 43.75 |
| CDY69197 | Canola | nucleus | 35.63 | 41.33 |
| CDY04769 | Canola | nucleus | 36.4 | 40.08 |
| CDX73279 | Canola | cytosol | 37.16 | 40.08 |
| CDY25759 | Canola | nucleus | 36.78 | 38.55 |
| CDY02889 | Canola | nucleus | 31.03 | 37.33 |
| CDX73451 | Canola | cytosol | 34.1 | 35.6 |
| CDY64698 | Canola | nucleus | 34.87 | 34.87 |
| CDY41556 | Canola | nucleus | 38.7 | 34.83 |
| CDX78261 | Canola | nucleus | 34.48 | 34.75 |
| CDX87460 | Canola | nucleus | 37.93 | 34.74 |
| CDX88432 | Canola | nucleus | 37.55 | 34.51 |
| CDY21356 | Canola | nucleus | 37.16 | 33.45 |
| CDY46642 | Canola | nucleus | 36.78 | 33.22 |
| CDX68024 | Canola | nucleus | 35.63 | 32.86 |
| CDX79253 | Canola | nucleus | 35.25 | 32.86 |
| CDY41557 | Canola | nucleus | 39.46 | 32.59 |
| CDX80046 | Canola | nucleus | 39.46 | 32.59 |
| CDY48016 | Canola | nucleus | 39.85 | 31.9 |
| CDY27523 | Canola | nucleus | 39.08 | 31.58 |
| CDY67263 | Canola | nucleus | 37.93 | 30.18 |
| CDY00446 | Canola | nucleus | 36.02 | 27.65 |
| CDY13339 | Canola | mitochondrion | 14.18 | 22.02 |
| CDY21399 | Canola | mitochondrion | 10.73 | 19.31 |
| CDY05301 | Canola | nucleus | 23.37 | 17.38 |
| CDY24657 | Canola | nucleus | 22.61 | 17.35 |
| CDY26001 | Canola | nucleus | 26.44 | 16.95 |
| CDY55846 | Canola | nucleus | 25.67 | 16.71 |
| CDY13782 | Canola | nucleus | 19.54 | 16.61 |
| CDY25867 | Canola | nucleus | 25.67 | 16.54 |
| CDY24106 | Canola | nucleus | 26.05 | 16.46 |
| CDX76950 | Canola | nucleus | 19.16 | 16.23 |
| CDY12068 | Canola | nucleus | 21.46 | 15.64 |
| CDX90262 | Canola | nucleus | 22.22 | 15.18 |
| CDY08023 | Canola | nucleus | 20.31 | 14.72 |
| CDY26229 | Canola | nucleus | 20.69 | 14.56 |
| CDY37724 | Canola | nucleus | 18.01 | 14.55 |
| CDY48318 | Canola | nucleus | 20.69 | 14.52 |
| CDX74070 | Canola | cytosol | 19.92 | 14.44 |
| CDY67299 | Canola | nucleus | 20.31 | 13.91 |
| CDY23739 | Canola | nucleus | 19.92 | 13.58 |
| CDY17173 | Canola | nucleus | 19.54 | 13.53 |
| CDY06947 | Canola | nucleus | 21.84 | 13.26 |
| CDX84689 | Canola | nucleus | 20.31 | 12.99 |
| CDY43360 | Canola | nucleus | 18.01 | 12.98 |
| CDY24201 | Canola | nucleus | 18.01 | 12.98 |
| CDY57580 | Canola | nucleus | 21.84 | 12.87 |
| CDY50131 | Canola | nucleus | 18.77 | 12.83 |
| CDX79527 | Canola | nucleus | 19.92 | 12.81 |
| CDX77783 | Canola | nucleus | 20.69 | 12.71 |
| CDY42724 | Canola | cytosol | 18.39 | 12.66 |
| CDY41059 | Canola | nucleus | 20.69 | 12.65 |
| CDY69852 | Canola | cytosol | 18.39 | 12.57 |
| CDY27186 | Canola | nucleus | 21.46 | 12.47 |
| CDX76015 | Canola | nucleus | 14.56 | 12.46 |
| CDX72106 | Canola | nucleus | 21.46 | 12.31 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 19.54 | 12.29 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 18.77 | 11.92 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 16.09 | 11.57 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 15.33 | 11.56 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 16.09 | 11.54 |
| CDY07975 | Canola | nucleus | 20.31 | 11.25 |
| CDX74030 | Canola | nucleus | 20.31 | 11.23 |
| CDY15850 | Canola | nucleus | 15.71 | 11.08 |
| CDX75170 | Canola | extracellular | 6.9 | 11.04 |
| CDY28918 | Canola | mitochondrion | 20.31 | 10.95 |
| CDY22136 | Canola | nucleus | 20.31 | 10.91 |
| CDY35966 | Canola | nucleus | 19.92 | 10.53 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 14.56 | 10.47 |
| CDY66272 | Canola | nucleus | 19.54 | 10.43 |
| CDY36357 | Canola | nucleus | 21.07 | 10.15 |
| CDY42577 | Canola | nucleus | 21.07 | 10.09 |
| CDX94301 | Canola | nucleus | 16.48 | 9.73 |
| CDX89316 | Canola | endoplasmic reticulum | 16.48 | 9.62 |
| CDY25957 | Canola | nucleus | 20.31 | 9.58 |
| CDY46690 | Canola | nucleus | 15.71 | 9.58 |
| CDY11989 | Canola | nucleus | 15.71 | 9.49 |
| CDY36753 | Canola | nucleus | 15.71 | 9.43 |
| CDY47382 | Canola | golgi, plastid | 14.94 | 9.38 |
| CDX92807 | Canola | nucleus | 16.09 | 9.33 |
| CDX69279 | Canola | nucleus | 8.43 | 9.32 |
| CDY46689 | Canola | nucleus | 16.48 | 9.29 |
| CDY40554 | Canola | nucleus | 20.31 | 8.08 |
| CDX69277 | Canola | mitochondrion | 4.98 | 6.99 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078GVE7 | UniProt:A0A078GVE7 | EnsemblPlants:CDY29496 | ProteinID:CDY29496 |
| ProteinID:CDY29496.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00043182001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44828 |
| PANTHER:PTHR44828:SF1 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EE5A7A |
| SEG:seg | : | : | : | : | : |
Description
BnaA06g14740DBnaA06g14740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GVE7]
Coordinates
chrLK032238:+:277183..279635
Molecular Weight (calculated)
28458.4 Da
IEP (calculated)
8.793
GRAVY (calculated)
-0.503
Length
261 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYHSIPGSG FHYTNSPFGD TTYTKVFVGG LAWETQSDTL RRHFEPFGDI LEAVVITDKN TARSKGYGFV TFRDPEAARR ACVDATPIID GRRANCNLAS
101: LGRPRLPMHY AMIPNLPGRI RPPSPYVGSV QGPRGSLFGS HPYQQPPAYS YQQGMMYPYG VTPYGPEYMY SQSQGLYGPY TGQQYLQVYG VPGAVNSPGY
201: QYGHLSQNIP GYTAIQGYSV PGSHIQSPYP SAIAGPSPTQ SHVIVQTPQH MQSSGSDQTT G
101: LGRPRLPMHY AMIPNLPGRI RPPSPYVGSV QGPRGSLFGS HPYQQPPAYS YQQGMMYPYG VTPYGPEYMY SQSQGLYGPY TGQQYLQVYG VPGAVNSPGY
201: QYGHLSQNIP GYTAIQGYSV PGSHIQSPYP SAIAGPSPTQ SHVIVQTPQH MQSSGSDQTT G
001: MAYQPVPGSG FHYLNSPFGD TTFTKVFVGG LAWETQSETL RQHFEQYGEI LEAVVIADKN TGRSKGYGFV TFRDPEAARR ACADPTPIID GRRANCNLAS
101: LGRPRPPLPY AVIPNMPGRL RPASPYIGNV QGPRGSLIGN YPYQQPLPYN YQQGVVYPYG VTAYGPEYMY SQSQGLYSPY MGQQYLQVYG VPGAVNSPVY
201: QYGQLSQTIP NGHGYTAVQG YSVPGSHILQ LGGPTVSTMT TSSMPALQAP YPSGIPGPAP VQSHIIVHSP QFMQSTASDQ TTSYS
101: LGRPRPPLPY AVIPNMPGRL RPASPYIGNV QGPRGSLIGN YPYQQPLPYN YQQGVVYPYG VTAYGPEYMY SQSQGLYSPY MGQQYLQVYG VPGAVNSPVY
201: QYGQLSQTIP NGHGYTAVQG YSVPGSHILQ LGGPTVSTMT TSSMPALQAP YPSGIPGPAP VQSHIIVHSP QFMQSTASDQ TTSYS
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I2E4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.