Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89316 | Canola | endoplasmic reticulum | 90.05 | 89.04 |
| CDX92807 | Canola | nucleus | 83.48 | 82.0 |
| CDY46689 | Canola | nucleus | 84.62 | 80.78 |
| AT4G26650.1 | Thale cress | nucleus | 82.81 | 80.44 |
| CDY46690 | Canola | nucleus | 74.89 | 77.34 |
| CDY11989 | Canola | nucleus | 69.23 | 70.83 |
| CDY36753 | Canola | nucleus | 68.33 | 69.43 |
| KRH14284 | Soybean | nucleus | 57.01 | 52.72 |
| VIT_19s0090g01660.t01 | Wine grape | nucleus | 57.01 | 52.72 |
| KRH73860 | Soybean | nucleus | 56.33 | 52.2 |
| KRG98573 | Soybean | nucleus | 56.56 | 52.19 |
| KRH46297 | Soybean | nucleus | 56.33 | 51.98 |
| PGSC0003DMT400037271 | Potato | nucleus | 54.3 | 51.06 |
| PGSC0003DMT400076643 | Potato | nucleus | 54.07 | 50.42 |
| GSMUA_Achr10P... | Banana | nucleus | 49.55 | 49.77 |
| GSMUA_Achr10P... | Banana | nucleus | 51.36 | 49.35 |
| Solyc10g006050.2.1 | Tomato | nucleus | 47.96 | 48.96 |
| Solyc12g014600.1.1 | Tomato | nucleus | 47.96 | 48.51 |
| Os11t0637700-01 | Rice | plasma membrane | 49.77 | 47.11 |
| CDY07975 | Canola | nucleus | 50.0 | 46.92 |
| HORVU0Hr1G008280.1 | Barley | nucleus | 48.87 | 46.65 |
| TraesCS4A01G150600.1 | Wheat | nucleus | 48.87 | 46.65 |
| TraesCS4D01G152200.1 | Wheat | nucleus | 48.87 | 46.65 |
| CDX74030 | Canola | nucleus | 49.77 | 46.61 |
| GSMUA_Achr6P10970_001 | Banana | nucleus | 52.71 | 46.6 |
| TraesCSU01G068500.1 | Wheat | nucleus | 48.64 | 46.44 |
| Zm00001d019079_P001 | Maize | cytosol | 46.38 | 45.76 |
| GSMUA_Achr4P33100_001 | Banana | nucleus | 45.7 | 45.7 |
| CDY22136 | Canola | nucleus | 50.23 | 45.68 |
| Zm00001d007772_P001 | Maize | nucleus | 46.15 | 45.43 |
| CDY66272 | Canola | nucleus | 50.0 | 45.19 |
| EER97452 | Sorghum | nucleus | 47.96 | 45.01 |
| CDY35966 | Canola | nucleus | 50.23 | 44.94 |
| Os07t0584500-01 | Rice | nucleus | 47.74 | 44.7 |
| EER98147 | Sorghum | nucleus | 45.7 | 44.59 |
| Zm00001d019084_P002 | Maize | nucleus | 45.7 | 44.49 |
| EER96020 | Sorghum | nucleus | 45.7 | 44.4 |
| TraesCS2B01G216600.2 | Wheat | cytosol | 47.06 | 44.16 |
| TraesCS2D01G197500.2 | Wheat | nucleus | 46.83 | 44.04 |
| CDY41059 | Canola | nucleus | 42.53 | 44.03 |
| CDY50131 | Canola | nucleus | 37.56 | 43.46 |
| Zm00001d006704_P002 | Maize | nucleus | 47.51 | 43.39 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 39.82 | 42.41 |
| CDX77783 | Canola | nucleus | 39.14 | 40.71 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 37.78 | 40.63 |
| CDY23739 | Canola | nucleus | 33.94 | 39.16 |
| Zm00001d019086_P001 | Maize | nucleus | 46.83 | 38.91 |
| CDY67299 | Canola | nucleus | 33.48 | 38.85 |
| TraesCS2A01G190400.1 | Wheat | plastid | 46.61 | 38.79 |
| CDY17173 | Canola | nucleus | 33.03 | 38.73 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 47.06 | 38.45 |
| CDY28918 | Canola | mitochondrion | 40.72 | 37.19 |
| OQU83904 | Sorghum | nucleus | 37.78 | 37.11 |
| CDX84689 | Canola | nucleus | 33.71 | 36.52 |
| CDX79527 | Canola | nucleus | 33.48 | 36.45 |
| CDX75170 | Canola | extracellular | 13.35 | 36.2 |
| CDY12068 | Canola | nucleus | 29.19 | 36.03 |
| CDY37724 | Canola | nucleus | 26.02 | 35.6 |
| CDX90262 | Canola | nucleus | 29.86 | 34.55 |
| CDY25957 | Canola | nucleus | 43.21 | 34.54 |
| GSMUA_Achr3P02300_001 | Banana | nucleus | 51.81 | 33.73 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 7.92 | 31.25 |
| CDY51790 | Canola | cytosol | 7.47 | 30.84 |
| CDY26229 | Canola | nucleus | 25.79 | 30.73 |
| CDY48318 | Canola | nucleus | 25.57 | 30.38 |
| CDY24201 | Canola | nucleus | 24.66 | 30.11 |
| CDY43360 | Canola | nucleus | 24.66 | 30.11 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 23.53 | 28.57 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 23.3 | 28.37 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 22.17 | 28.32 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 22.62 | 27.55 |
| CDY40554 | Canola | nucleus | 40.27 | 27.13 |
| CDY42724 | Canola | cytosol | 20.14 | 23.48 |
| CDY69852 | Canola | cytosol | 20.14 | 23.3 |
| CDX69279 | Canola | nucleus | 11.54 | 21.61 |
| CDY42577 | Canola | nucleus | 26.24 | 21.28 |
| CDY36357 | Canola | nucleus | 26.02 | 21.22 |
| CDY69197 | Canola | nucleus | 10.18 | 20.0 |
| CDY04769 | Canola | nucleus | 10.41 | 19.41 |
| CDX73279 | Canola | cytosol | 10.41 | 19.01 |
| CDY02889 | Canola | nucleus | 9.28 | 18.89 |
| CDX73451 | Canola | cytosol | 9.95 | 17.6 |
| CDY31508 | Canola | nucleus | 9.95 | 17.6 |
| CDY31859 | Canola | nucleus | 9.5 | 17.43 |
| CDY25759 | Canola | nucleus | 9.73 | 17.27 |
| CDY55846 | Canola | nucleus | 15.61 | 17.21 |
| CDX78261 | Canola | nucleus | 9.95 | 16.99 |
| CDX96615 | Canola | nucleus | 9.5 | 16.67 |
| CDY01349 | Canola | nucleus | 9.05 | 16.6 |
| CDY29496 | Canola | nucleus | 9.73 | 16.48 |
| CDY64698 | Canola | nucleus | 9.73 | 16.48 |
| CDY25867 | Canola | nucleus | 14.93 | 16.3 |
| CDY24106 | Canola | nucleus | 15.16 | 16.22 |
| CDY26001 | Canola | nucleus | 14.93 | 16.22 |
| CDY33653 | Canola | nucleus | 9.28 | 16.21 |
| CDY41556 | Canola | nucleus | 10.41 | 15.86 |
| CDX88283 | Canola | nucleus | 9.95 | 15.71 |
| CDY13782 | Canola | nucleus | 10.86 | 15.64 |
| CDX76950 | Canola | nucleus | 10.63 | 15.26 |
| CDX80046 | Canola | nucleus | 10.86 | 15.19 |
| CDY41557 | Canola | nucleus | 10.63 | 14.87 |
| CDX76015 | Canola | nucleus | 10.18 | 14.75 |
| CDY27186 | Canola | nucleus | 14.93 | 14.7 |
| CDY27523 | Canola | nucleus | 10.63 | 14.55 |
| CDX88432 | Canola | nucleus | 9.28 | 14.44 |
| CDY48016 | Canola | nucleus | 10.63 | 14.42 |
| CDX87460 | Canola | nucleus | 9.28 | 14.39 |
| CDX72106 | Canola | nucleus | 14.71 | 14.29 |
| CDX79253 | Canola | nucleus | 9.05 | 14.29 |
| CDY57580 | Canola | nucleus | 14.25 | 14.22 |
| CDY06947 | Canola | nucleus | 13.8 | 14.19 |
| CDX87594 | Canola | nucleus | 10.18 | 14.06 |
| CDX68024 | Canola | nucleus | 8.82 | 13.78 |
| CDY67263 | Canola | nucleus | 10.18 | 13.72 |
| CDY46642 | Canola | nucleus | 8.6 | 13.15 |
| CDY21356 | Canola | nucleus | 8.6 | 13.1 |
| CDX69277 | Canola | mitochondrion | 5.43 | 12.9 |
| CDY08023 | Canola | nucleus | 9.73 | 11.94 |
| CDY00446 | Canola | nucleus | 9.05 | 11.76 |
| CDY21399 | Canola | mitochondrion | 3.85 | 11.72 |
| CDX74070 | Canola | cytosol | 9.5 | 11.67 |
| CDY47382 | Canola | golgi, plastid | 10.86 | 11.54 |
| CDY24657 | Canola | nucleus | 8.82 | 11.47 |
| CDY15850 | Canola | nucleus | 9.28 | 11.08 |
| CDY05301 | Canola | nucleus | 8.37 | 10.54 |
| CDY13339 | Canola | mitochondrion | 3.62 | 9.52 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078DYM1 | EnsemblPlants:CDX94301 | ProteinID:CDX94301 | ProteinID:CDX94301.1 |
| InterPro:DAZAP1_RRM2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00157395001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44291 |
| PANTHER:PTHR44291:SF1 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EF3402 |
| SEG:seg | : | : | : | : | : |
Description
BnaC01g18830D
Coordinates
chrLK031881:-:79122..80990
Molecular Weight (calculated)
48041.5 Da
IEP (calculated)
7.315
GRAVY (calculated)
-0.547
Length
442 amino acids
Sequence
(BLAST)
(BLAST)
001: MESVSDLGKL FIGGISWDTD EERLGEYFSK FGDLVESVIM RDRATGRARG FGFIVFADPS VAERVIMEKH IIDGRTVEAK KAVPRDDQQQ VLKRHASPMH
101: LISPSHGGNG GRTKKIFVGG LPSSITEAEF KNYFDQFGTV SDVVVMYDHN TQRPRGFGFI TFDSEESVDI VLHKTFHELN GKMVEVKRAV PKEPSQASIN
201: RSSPVLGFGN NNYGVVSNNS YFNSFAPGYS NNPGGRFSPI GSGRNAFSNF GLGSNQELGL NGNTLGFNRL PGDQYFNNAS PNRYNSPIGF NRGDSAYNPS
301: NRDLWGNSPG LNLGVSVGNN RGNWGLSDTN GYGRSFGTGS GLSALSFSGN NNNTNGFDGS IGELYRGSSV YSDSTWQQML PYHQSSNELE GLSRSYGFGV
401: GNVGSEPSAD ASEGYPRSYS VGGNRQTNRG MYLKGFSVVY LL
101: LISPSHGGNG GRTKKIFVGG LPSSITEAEF KNYFDQFGTV SDVVVMYDHN TQRPRGFGFI TFDSEESVDI VLHKTFHELN GKMVEVKRAV PKEPSQASIN
201: RSSPVLGFGN NNYGVVSNNS YFNSFAPGYS NNPGGRFSPI GSGRNAFSNF GLGSNQELGL NGNTLGFNRL PGDQYFNNAS PNRYNSPIGF NRGDSAYNPS
301: NRDLWGNSPG LNLGVSVGNN RGNWGLSDTN GYGRSFGTGS GLSALSFSGN NNNTNGFDGS IGELYRGSSV YSDSTWQQML PYHQSSNELE GLSRSYGFGV
401: GNVGSEPSAD ASEGYPRSYS VGGNRQTNRG MYLKGFSVVY LL
001: MEQKMESASD LGKLFIGGIS WDTDEERLQE YFGKYGDLVE AVIMRDRTTG RARGFGFIVF ADPSVAERVI MDKHIIDGRT VEAKKAVPRD DQQVLKRHAS
101: PMHLISPSHG GNGGGARTKK IFVGGLPSSI TEAEFKNYFD QFGTIADVVV MYDHNTQRPR GFGFITFDSE ESVDMVLHKT FHELNGKMVE VKRAVPKELS
201: STTPNRSPLI GYGNNYGVVP NRSSANSYFN SFPPGYNNNN LGSAGRFSPI GSGRNAFSSF GLGLNQELNL NSNFDGNTLG YSRIPGNQYF NSASPNRYNS
301: PIGYNRGDSA YNPSNRDLWG NRSDSSGPGW NLGVSVGNNR GNWGLSSVVS DNNGYGRSYG AGSGLSGLSF AGNTNGFDGS IGELYRGSSV YSDSTWQQSM
401: PHHQSSNELD GLSRSYGFGI DNVGSDPSAN ASEGYSGNYN VGNRQTHRGI EA
101: PMHLISPSHG GNGGGARTKK IFVGGLPSSI TEAEFKNYFD QFGTIADVVV MYDHNTQRPR GFGFITFDSE ESVDMVLHKT FHELNGKMVE VKRAVPKELS
201: STTPNRSPLI GYGNNYGVVP NRSSANSYFN SFPPGYNNNN LGSAGRFSPI GSGRNAFSSF GLGLNQELNL NSNFDGNTLG YSRIPGNQYF NSASPNRYNS
301: PIGYNRGDSA YNPSNRDLWG NRSDSSGPGW NLGVSVGNNR GNWGLSSVVS DNNGYGRSYG AGSGLSGLSF AGNTNGFDGS IGELYRGSSV YSDSTWQQSM
401: PHHQSSNELD GLSRSYGFGI DNVGSDPSAN ASEGYSGNYN VGNRQTHRGI EA
Arabidopsis Description
AT4g26650/T15N24_100 [Source:UniProtKB/TrEMBL;Acc:Q8W569]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.