Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER98147 | Sorghum | nucleus | 98.9 | 99.34 |
| Zm00001d019079_P001 | Maize | cytosol | 93.63 | 95.09 |
| Zm00001d007772_P001 | Maize | nucleus | 92.53 | 93.76 |
| Zm00001d019084_P002 | Maize | nucleus | 89.67 | 89.87 |
| EER97452 | Sorghum | nucleus | 84.18 | 81.32 |
| Os07t0584500-01 | Rice | nucleus | 82.2 | 79.24 |
| TraesCS2B01G216600.2 | Wheat | cytosol | 80.22 | 77.49 |
| TraesCS2D01G197500.2 | Wheat | nucleus | 80.0 | 77.45 |
| TraesCS2A01G190400.1 | Wheat | plastid | 80.22 | 68.74 |
| GSMUA_Achr10P... | Banana | nucleus | 55.38 | 57.27 |
| KRH74025 | Soybean | nucleus | 57.8 | 55.37 |
| VIT_12s0057g00480.t01 | Wine grape | nucleus | 57.8 | 55.02 |
| GSMUA_Achr4P33100_001 | Banana | nucleus | 53.19 | 54.75 |
| GSMUA_Achr10P... | Banana | nucleus | 55.16 | 54.57 |
| Solyc04g014820.2.1 | Tomato | cytosol | 31.87 | 54.1 |
| KRH14098 | Soybean | nucleus | 56.92 | 54.07 |
| VIT_19s0090g01660.t01 | Wine grape | nucleus | 56.48 | 53.77 |
| KRG98573 | Soybean | nucleus | 56.48 | 53.65 |
| Solyc07g048030.2.1 | Tomato | nucleus | 51.43 | 53.55 |
| PGSC0003DMT400037271 | Potato | nucleus | 55.16 | 53.4 |
| KRH46297 | Soybean | nucleus | 55.6 | 52.82 |
| PGSC0003DMT400076643 | Potato | nucleus | 54.73 | 52.53 |
| GSMUA_Achr6P10970_001 | Banana | nucleus | 57.14 | 52.0 |
| KRH73860 | Soybean | nucleus | 54.51 | 51.99 |
| PGSC0003DMT400074192 | Potato | nucleus | 54.07 | 51.9 |
| Solyc10g006050.2.1 | Tomato | nucleus | 49.23 | 51.73 |
| Solyc12g014600.1.1 | Tomato | nucleus | 49.23 | 51.26 |
| Solyc12g006180.1.1 | Tomato | nucleus | 48.57 | 50.46 |
| KRH14284 | Soybean | nucleus | 52.97 | 50.42 |
| PGSC0003DMT400034757 | Potato | nucleus | 51.65 | 50.21 |
| Solyc11g012470.1.1 | Tomato | nucleus | 46.15 | 49.07 |
| CDY07975 | Canola | nucleus | 49.23 | 47.56 |
| CDY22136 | Canola | nucleus | 50.77 | 47.53 |
| Bra040031.1-P | Field mustard | nucleus | 50.77 | 47.53 |
| CDX74030 | Canola | nucleus | 49.23 | 47.46 |
| PGSC0003DMT400060554 | Potato | nucleus | 49.01 | 47.45 |
| CDY66272 | Canola | nucleus | 50.99 | 47.44 |
| CDY35966 | Canola | nucleus | 51.21 | 47.17 |
| Bra001267.1-P | Field mustard | nucleus | 48.79 | 47.13 |
| OQU83904 | Sorghum | nucleus | 46.59 | 47.11 |
| Bra029681.1-P | Field mustard | nucleus | 51.87 | 47.11 |
| AT3G07810.2 | Thale cress | nucleus | 51.21 | 47.07 |
| AT4G26650.1 | Thale cress | nucleus | 46.15 | 46.15 |
| CDX94301 | Canola | nucleus | 44.4 | 45.7 |
| CDX77783 | Canola | nucleus | 42.64 | 45.65 |
| CDY46690 | Canola | nucleus | 42.86 | 45.56 |
| CDY36753 | Canola | nucleus | 43.3 | 45.29 |
| Bra028973.1-P | Field mustard | nucleus | 43.08 | 45.27 |
| CDY50131 | Canola | nucleus | 37.8 | 45.03 |
| CDX89316 | Canola | endoplasmic reticulum | 44.18 | 44.97 |
| Bra021062.1-P | Field mustard | nucleus | 38.68 | 44.9 |
| CDX92807 | Canola | nucleus | 44.4 | 44.89 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 40.88 | 44.82 |
| CDY11989 | Canola | nucleus | 42.42 | 44.68 |
| Bra024928.1-P | Field mustard | nucleus | 41.1 | 44.52 |
| Bra017475.1-P | Field mustard | nucleus | 41.76 | 44.5 |
| CDY41059 | Canola | nucleus | 41.76 | 44.5 |
| Bra026413.1-P | Field mustard | nucleus | 41.1 | 44.21 |
| AT5G47620.4 | Thale cress | cytoskeleton, cytosol, nucleus | 43.96 | 44.15 |
| CDY46689 | Canola | nucleus | 44.4 | 43.63 |
| Bra019094.1-P | Field mustard | nucleus | 44.4 | 43.63 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 38.68 | 42.82 |
| Bra022145.1-P | Field mustard | nucleus | 42.86 | 42.39 |
| CDY28918 | Canola | mitochondrion | 43.3 | 40.7 |
| AT5G55550.10 | Thale cress | nucleus | 45.05 | 40.43 |
| OQU90054 | Sorghum | cytosol, mitochondrion, nucleus | 6.81 | 39.24 |
| GSMUA_Achr3P02300_001 | Banana | nucleus | 56.92 | 38.14 |
| KXG38359 | Sorghum | nucleus | 37.36 | 37.53 |
| CDX75170 | Canola | extracellular | 13.41 | 37.42 |
| CDY25957 | Canola | nucleus | 42.2 | 34.72 |
| EES01076 | Sorghum | nucleus | 26.15 | 34.1 |
| CDY40554 | Canola | nucleus | 42.86 | 29.73 |
| EES06526 | Sorghum | nucleus | 25.49 | 29.67 |
| KXG37469 | Sorghum | cytosol | 19.34 | 29.04 |
| EER88542 | Sorghum | nucleus | 25.93 | 28.5 |
| EER95824 | Sorghum | cytosol | 23.74 | 28.35 |
| KXG34100 | Sorghum | cytosol | 22.2 | 28.06 |
| OQU81002 | Sorghum | nucleus | 18.46 | 25.07 |
| EES01849 | Sorghum | nucleus | 13.63 | 23.66 |
| OQU85520 | Sorghum | nucleus, plastid | 12.31 | 18.98 |
| EES03272 | Sorghum | nucleus | 17.58 | 17.98 |
| EER90058 | Sorghum | plastid | 11.21 | 17.83 |
| KXG30724 | Sorghum | plastid | 12.09 | 17.74 |
| EER95048 | Sorghum | cytosol, nucleus, plastid | 11.87 | 17.42 |
| EES02078 | Sorghum | nucleus | 12.75 | 17.16 |
| OQU76075 | Sorghum | plastid | 12.31 | 15.86 |
| KXG30578 | Sorghum | nucleus | 12.97 | 15.86 |
| EES02736 | Sorghum | plastid | 14.95 | 14.66 |
| EES12939 | Sorghum | nucleus | 15.82 | 13.66 |
| EES10068 | Sorghum | nucleus | 11.43 | 12.06 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:8063665 | UniProt:C5XC00 | InterPro:DAZAP1_RRM2 | EnsemblPlants:EER96020 |
| ProteinID:EER96020 | ProteinID:EER96020.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44291 |
| PANTHER:PTHR44291:SF4 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | EnsemblPlantsGene:SORBI_3002G067100 | SUPFAM:SSF54928 |
| unigene:Sbi.21112 | UniParc:UPI0001A8308F | RefSeq:XP_002459499.1 | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr2:+:6650733..6657120
Molecular Weight (calculated)
48110.1 Da
IEP (calculated)
7.918
GRAVY (calculated)
-0.395
Length
455 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAAAAAAVA DYGKLFVGGI SWETSEDRLR DYFGRFGEVT EAVIMRDRST GRARGFGFVV FADPAVAERV TMDKHMIDGR MVEAKKAVPR DDHSIVSKSN
101: ASSIGSPGPG RTRKIFVGGL PSNVTEADFR RYFEQFGVIT DVVVMYDHNT QRPRGFGFIT YDSEDAVDKA LHKSFHELNG KMVEVKRAVP KEQSPGPVVR
201: SPVGVGQNYA MNRVHSFLNG FNQGYNPNPI GGYGMRVDGR YGLLSGARNG FSSFGPGYGM GMNVEGGMSG TFGASSGFIS NSNGRQMGSY FNASSNRLGS
301: PMGYLGLNDV PGSMLSSMSR NVWGNGSLNY PSNPTNMSAF SSPGNGGQVG ITGDSWGGLP SAHGMGSISS LGSGNLGRGA GDNTFGLPSG SYGRSNSTGT
401: IGEPFSASGN TYEVNNPDTY GSSSIYGGTA WRFASSEVDM PSFGHDIGNV DPTIK
101: ASSIGSPGPG RTRKIFVGGL PSNVTEADFR RYFEQFGVIT DVVVMYDHNT QRPRGFGFIT YDSEDAVDKA LHKSFHELNG KMVEVKRAVP KEQSPGPVVR
201: SPVGVGQNYA MNRVHSFLNG FNQGYNPNPI GGYGMRVDGR YGLLSGARNG FSSFGPGYGM GMNVEGGMSG TFGASSGFIS NSNGRQMGSY FNASSNRLGS
301: PMGYLGLNDV PGSMLSSMSR NVWGNGSLNY PSNPTNMSAF SSPGNGGQVG ITGDSWGGLP SAHGMGSISS LGSGNLGRGA GDNTFGLPSG SYGRSNSTGT
401: IGEPFSASGN TYEVNNPDTY GSSSIYGGTA WRFASSEVDM PSFGHDIGNV DPTIK
001: MQSDNGKLFI GGISWDTNEE RLKEYFSSFG EVIEAVILKD RTTGRARGFG FVVFADPAVA EIVITEKHNI DGRLVEAKKA VPRDDQNMVN RSNSSSIQGS
101: PGGPGRTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP GPSRSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PAAVGGYGLR MDGRFSPVGA GRSGFANYSS GYGMNVNFDQ GLPTGFTGGT NYNGNVDYGR GMSPYYIGNT NRFGPAVGYE
301: GGNGGGNSSF FSSVTRNLWG NNGGLNYNNN NTNSNSNTYM GGSSSGNNTL SGPFGNSGVN WGAPGGGNNA VSNENVKFGY GGNGESGFGL GTGGYAARNP
401: GANKAAPSSS FSSASATNNT GYDTAGLAEF YGNGAVYSDP TWRSPTPETE GPAPFSYGIG GGVPSSDVSA RSSSPGYVGS YSVNKRQPNR GIAT
101: PGGPGRTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP GPSRSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PAAVGGYGLR MDGRFSPVGA GRSGFANYSS GYGMNVNFDQ GLPTGFTGGT NYNGNVDYGR GMSPYYIGNT NRFGPAVGYE
301: GGNGGGNSSF FSSVTRNLWG NNGGLNYNNN NTNSNSNTYM GGSSSGNNTL SGPFGNSGVN WGAPGGGNNA VSNENVKFGY GGNGESGFGL GTGGYAARNP
401: GANKAAPSSS FSSASATNNT GYDTAGLAEF YGNGAVYSDP TWRSPTPETE GPAPFSYGIG GGVPSSDVSA RSSSPGYVGS YSVNKRQPNR GIAT
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JFN7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.