Factsheet for Bra017475.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41059	Canola	nucleus	98.83	98.83
Bra024928.1-P	Field mustard	nucleus	85.01	86.43
AT5G47620.4	Thale cress	cytoskeleton, cytosol, nucleus	85.71	80.79
Bra022145.1-P	Field mustard	nucleus	86.42	80.22
Bra021062.1-P	Field mustard	nucleus	58.31	63.52
GSMUA_Achr10P...	Banana	nucleus	46.84	45.45
GSMUA_Achr10P...	Banana	nucleus	48.95	45.43
TraesCSU01G068500.1	Wheat	nucleus	48.24	44.49
TraesCS4D01G152200.1	Wheat	nucleus	48.24	44.49
TraesCS4A01G150600.1	Wheat	nucleus	48.01	44.28
HORVU0Hr1G008280.1	Barley	nucleus	48.01	44.28
Bra001267.1-P	Field mustard	nucleus	48.71	44.16
Bra028973.1-P	Field mustard	nucleus	44.26	43.65
Os11t0637700-01	Rice	plasma membrane	47.54	43.47
Os07t0584500-01	Rice	nucleus	48.01	43.43
GSMUA_Achr6P10970_001	Banana	nucleus	50.82	43.4
Bra040031.1-P	Field mustard	nucleus	48.71	42.8
GSMUA_Achr4P33100_001	Banana	nucleus	44.26	42.76
TraesCS2B01G216600.2	Wheat	cytosol	47.07	42.68
TraesCS2D01G197500.2	Wheat	nucleus	46.6	42.34
Zm00001d007772_P001	Maize	nucleus	44.5	42.32
Zm00001d019079_P001	Maize	cytosol	44.26	42.19
EER96020	Sorghum	nucleus	44.5	41.76
EER98147	Sorghum	nucleus	44.03	41.5
EER97452	Sorghum	nucleus	45.43	41.19
Bra029681.1-P	Field mustard	nucleus	48.24	41.12
Bra019094.1-P	Field mustard	nucleus	44.5	41.04
Bra026413.1-P	Field mustard	nucleus	40.28	40.66
Bra035441.1-P	Field mustard	mitochondrion, nucleus, plastid	7.26	39.74
Zm00001d006704_P002	Maize	nucleus	44.96	39.67
Zm00001d019084_P002	Maize	nucleus	42.15	39.65
Bra005496.1-P	Field mustard	nucleus	33.26	37.77
Bra021850.1-P	Field mustard	nucleus	32.32	37.6
TraesCS2A01G190400.1	Wheat	plastid	46.37	37.29
Bra010757.1-P	Field mustard	nucleus	33.26	37.17
Bra022938.1-P	Field mustard	nucleus	34.66	36.27
OQU83904	Sorghum	nucleus	37.7	35.78
Zm00001d021950_P007	Maize	endoplasmic reticulum, nucleus	45.2	35.67
Zm00001d019086_P001	Maize	nucleus	43.79	35.15
GSMUA_Achr3P02300_001	Banana	nucleus	48.48	30.49
Bra039380.1-P	Field mustard	nucleus	25.76	30.39
Bra027860.1-P	Field mustard	cytosol, nucleus, peroxisome	25.76	30.22
Bra024547.1-P	Field mustard	nucleus	12.88	23.01
Bra025568.1-P	Field mustard	nucleus	29.27	22.94
Bra017802.1-P	Field mustard	nucleus	21.31	22.3
Bra012350.1-P	Field mustard	nucleus	12.41	21.29
Bra025852.1-P	Field mustard	nucleus	12.65	20.69
Bra012254.1-P	Field mustard	nucleus	11.48	20.33
Bra016445.1-P	Field mustard	nucleus	12.18	20.16
Bra003651.1-P	Field mustard	nucleus	11.24	17.71
Bra010203.1-P	Field mustard	nucleus	12.18	17.05
Bra007096.1-P	Field mustard	nucleus	10.3	16.99
Bra004508.1-P	Field mustard	nucleus	12.18	16.67
Bra031385.1-P	Field mustard	nucleus	11.24	16.55
Bra040485.1-P	Field mustard	nucleus	12.41	16.26
Bra039664.1-P	Field mustard	nucleus	15.69	16.14
Bra012321.1-P	Field mustard	nucleus	10.77	15.92
Bra038113.1-P	Field mustard	nucleus	15.22	15.7
Bra015741.1-P	Field mustard	nucleus, plastid, vacuole	11.24	15.38
Bra001228.1-P	Field mustard	cytosol	12.88	15.19
Bra007277.1-P	Field mustard	nucleus	14.99	14.25
Bra031230.1-P	Field mustard	nucleus	10.07	14.01
Bra029612.1-P	Field mustard	nucleus	9.37	13.94
Bra014667.1-P	Field mustard	nucleus	9.6	13.44
Bra016954.1-P	Field mustard	nucleus	13.11	12.73
Bra030265.1-P	Field mustard	nucleus	9.37	10.93

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EnsemblPlantsGene:Bra017475	EnsemblPlants:Bra017475.1	EnsemblPlants:Bra017475.1-P	InterPro:DAZAP1_RRM2
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
UniProt:M4DLU4	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44291	PANTHER:PTHR44291:SF3
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI00025423CA	SEG:seg

Description

AT5G47620 (E=1e-192) | heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative

Coordinates

chrA09:+:15665212..15666735

Molecular Weight (calculated)

45565.4 Da

IEP (calculated)

7.735

GRAVY (calculated)

-0.326

Length

427 amino acids

Sequence
(BLAST)

001: MEMESSCKLF IGGISWETSE DRLREYFQSF GEVLEAVIMK DRATGRARGF GFLVFADPNV AERVVLIRHV IDGKIVEAKK AVPRDDHVVL NRSNSSLQGS
101: PGPATSKKIF VGGLASSVTE AEFKMYFAQF GTITDVVVMY DHRTQRPRGF GFVSFDSEEA VDRVLQRTFH ELNGKMVEVK LAVPKEMALN PIRNQMNVNS
201: FGSSRISALL MNEYTQGFSQ SPISSYGVQP EVRYSPGVGG NRGGFSPFGH GFGIELNFEP GQTQNYGSGS NAGFGRPFSP GYAASQGRYG SQIESGGGAS
301: VRNNLWGNGG GLGGYMSNSQ ISRSSFNGNS GMSSLGSIGD NWGGAARARS GYRSEGGGLG LDAMRGVHVG GYSSGSSSLE TDSLYSDSAW LSLPAKAEER
401: LGMGAFDFMS KGPAGYINTQ PNGGIAA

Best Arabidopsis Sequence Match ( AT5G47620.5 )
(BLAST)

001: MEMESCKLFI GGISWETSED RLRDYFHSFG EVLEAVIMKD RATGRARGFG FVVFADPNVA ERVVLLKHII DGKIVEAKKA VPRDDHVVFN KSNSSLQGSP
101: GPSNSKKIFV GGLASSVTEA EFKKYFAQFG MITDVVVMYD HRTQRPRGFG FISYDSEEAV DKVLQKTFHE LNGKMVEVKL AVPKDMALNT MRNQMNVNSF
201: GTSRISSLLN EYTQGFSPSP ISGYGVKPEV RYSPAVGNRG GFSPFGHGYG IELNFEPNQT QNYGSGSSGG FGRPFSPGYA ASLGRFGSQM ESGGASVGNG
301: SVLNAAPKNH LWGNGGLGYM SNSPISRSSF SGNSGMSSLG SIGDNWGTVA RARSSYHGER GGVGLEAMRG VHVGGYSSGS SILEADSLYS DSMWLSLPAK
401: AEEGLGMGPL DFMSRGPAGY INRQPNGGIA A

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JYK6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.