Factsheet for Bra038113.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
PTS1:	peroxisome
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25867	Canola	nucleus	97.34	99.51
Bra039664.1-P	Field mustard	nucleus	83.09	82.89
AT3G15010.2	Thale cress	nucleus	75.85	77.72
GSMUA_Achr5P09550_001	Banana	nucleus	54.83	61.02
KRH26210	Soybean	nucleus	63.53	60.18
KRH55109	Soybean	nucleus	63.77	59.46
VIT_19s0014g01570.t01	Wine grape	nucleus	64.25	59.24
GSMUA_Achr5P09540_001	Banana	nucleus	51.21	54.64
PGSC0003DMT400039802	Potato	nucleus	54.83	50.9
Solyc12g014210.1.1	Tomato	nucleus	37.92	46.87
HORVU3Hr1G053990.1	Barley	nucleus	49.52	46.49
TraesCS3A01G220400.1	Wheat	nucleus	49.28	46.36
TraesCS3D01G232300.1	Wheat	nucleus	49.03	46.14
TraesCS3B01G250700.1	Wheat	golgi	49.03	46.14
Os01t0614500-01	Rice	nucleus	48.55	44.97
EES03272	Sorghum	nucleus	47.58	44.27
Zm00001d011336_P002	Maize	nucleus	47.58	43.97
Zm00001d044469_P003	Maize	nucleus	46.62	43.18
Bra035441.1-P	Field mustard	mitochondrion, nucleus, plastid	6.76	35.9
PGSC0003DMT400032256	Potato	nucleus	26.57	35.26
PGSC0003DMT400031324	Potato	cytosol	11.35	33.81
Bra007277.1-P	Field mustard	nucleus	33.33	30.73
Bra014667.1-P	Field mustard	nucleus	21.74	29.51
Bra016954.1-P	Field mustard	nucleus	31.16	29.32
PGSC0003DMT400031418	Potato	extracellular, golgi	25.36	28.85
Bra016445.1-P	Field mustard	nucleus	17.15	27.52
Bra031230.1-P	Field mustard	nucleus	20.29	27.36
Bra012254.1-P	Field mustard	nucleus	15.22	26.14
Bra025852.1-P	Field mustard	nucleus	16.43	26.05
Bra012350.1-P	Field mustard	nucleus	13.29	22.09
Bra024547.1-P	Field mustard	nucleus	12.56	21.76
Bra007096.1-P	Field mustard	nucleus	13.53	21.62
Bra003651.1-P	Field mustard	nucleus	14.01	21.4
Bra031385.1-P	Field mustard	nucleus	14.98	21.38
Bra005496.1-P	Field mustard	nucleus	19.08	21.01
Bra010203.1-P	Field mustard	nucleus	15.46	20.98
Bra010757.1-P	Field mustard	nucleus	19.32	20.94
Bra030265.1-P	Field mustard	nucleus	18.12	20.49
Bra039380.1-P	Field mustard	nucleus	17.63	20.17
Bra021850.1-P	Field mustard	nucleus	17.87	20.16
Bra012321.1-P	Field mustard	nucleus	14.01	20.07
Bra004508.1-P	Field mustard	nucleus	14.73	19.55
Bra022938.1-P	Field mustard	nucleus	18.36	18.63
Bra040485.1-P	Field mustard	nucleus	14.49	18.4
Bra021062.1-P	Field mustard	nucleus	16.67	17.6
Bra001267.1-P	Field mustard	nucleus	19.81	17.41
Bra029612.1-P	Field mustard	nucleus	11.84	17.07
Bra029681.1-P	Field mustard	nucleus	20.53	16.97
Bra017802.1-P	Field mustard	nucleus	16.67	16.91
Bra040031.1-P	Field mustard	nucleus	19.81	16.87
Bra015741.1-P	Field mustard	nucleus, plastid, vacuole	12.56	16.67
Bra025568.1-P	Field mustard	nucleus	21.5	16.33
Bra027860.1-P	Field mustard	cytosol, nucleus, peroxisome	14.25	16.21
Bra024928.1-P	Field mustard	nucleus	16.43	16.19
Bra026413.1-P	Field mustard	nucleus	15.7	15.37
Bra017475.1-P	Field mustard	nucleus	15.7	15.22
Bra028973.1-P	Field mustard	nucleus	15.7	15.01
Bra019094.1-P	Field mustard	nucleus	16.67	14.9
Bra022145.1-P	Field mustard	nucleus	16.18	14.57
Bra001228.1-P	Field mustard	cytosol	11.11	12.71

Protein Annotations

EnsemblPlants:Bra038113.1	EnsemblPlants:Bra038113.1-P	EnsemblPlantsGene:Bra038113	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR44678	PANTHER:PTHR44678:SF2	PFAM:PF00076	PFscan:PS50102	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI00025476FB	UniProt:M4FAJ9	MapMan:35.1	:

Description

AT3G15010 (E=2e-112) | RNA recognition motif (RRM)-containing protein

Coordinates

chrA05:+:10422358..10423602

Molecular Weight (calculated)

42399.1 Da

IEP (calculated)

8.349

GRAVY (calculated)

-0.389

Length

414 amino acids

Sequence
(BLAST)

001: MDMLKKRRLD ENGIGLLNDG HVTTISTRLT PHDARKIIDR FSNDQLLDIL QEAVARHPDV LELVRSTADS DISQRKLFIR GLAAETTTEG LRSLFSTYGD
101: LEEAIVILDK VTAKSKGYGF VTFKHVDGAL LALKDPSKKI DGRVTVTQLA AAGNQGTTAH VSDISTRKIY VANVPFEMPA DRLLNQFLAY GDIEEGPLGF
201: DKVTGKSRGF ALFVYKTSEG AQAALADPTK VVDGKHLQCK LAIDGKKGKP PGQDGGAGPG GHGQGDGMGM VPPPGPYAGA HGGPGGMGPY GGYSGGPPPH
301: HMNSTPSSMG GAAAPAGGGG YGGAYAGHYG GYVGAGSGGY GSMSGAGGGY GGPGGGSGPY RMPPSSMSGG GYPESGHYGH SSASAYPGQH PPVGSSTVPR
401: IPLGGMYPNG PPNY

Best Arabidopsis Sequence Match ( AT3G15010.2 )
(BLAST)

001: MDMMKKRKLD ENGNGLNTNG GGTIGPTRLS PQDARKIIER FTTDQLLDLL QEAIVRHPDV LESVRLTADS DISQRKLFIR GLAADTTTEG LRSLFSSYGD
101: LEEAIVILDK VTGKSKGYGF VTFMHVDGAL LALKEPSKKI DGRVTVTQLA ASGNQGTGSQ IADISMRKIY VANVPFDMPA DRLLNHFMAY GDVEEGPLGF
201: DKVTGKSRGF ALFVYKTAEG AQAALADPVK VIDGKHLNCK LAVDGKKGGK PGMPQAQDGG SGHGHVHGEG MGMVRPAGPY GAAGGISAYG GYSGGPPAHH
301: MNSTHSSMGV GSAGYGGHYG GYGGPGGTGV YGGLGGGYGG PGTGSGQYRM PPSSMPGGGG YPESGHYGLS SSAGYPGQHH QAVGTSPVPR VPHGGMYPNG
401: PPNY

Arabidopsis Description

UBA2CUBP1-associated protein 2C [Source:UniProtKB/Swiss-Prot;Acc:Q9LKA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.