Factsheet for Bra039380.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43360	Canola	nucleus	99.72	99.72
AT3G13224.2	Thale cress	nucleus	89.5	90.5
VIT_19s0015g00920.t01	Wine grape	nucleus	71.27	74.14
VIT_18s0117g00150.t01	Wine grape	nucleus	67.13	67.69
KRH17717	Soybean	nucleus	64.09	65.91
PGSC0003DMT400044868	Potato	nucleus	59.39	62.87
Solyc07g045240.2.1	Tomato	nucleus	59.12	62.39
GSMUA_AchrUn_...	Banana	cytosol	56.08	61.7
GSMUA_Achr1P09440_001	Banana	cytosol	56.08	59.88
GSMUA_Achr1P19260_001	Banana	nucleus	55.8	59.76
Os08t0320100-01	Rice	nucleus	54.97	56.86
EES01076	Sorghum	nucleus	54.7	56.73
Zm00001d030579_P001	Maize	mitochondrion	53.31	55.46
GSMUA_Achr8P25380_001	Banana	nucleus	56.08	53.56
TraesCS7D01G281300.1	Wheat	nucleus	51.38	52.39
TraesCS7A01G282600.1	Wheat	cytosol	50.55	52.29
TraesCS7B01G178300.1	Wheat	nucleus	51.38	52.25
HORVU7Hr1G060930.1	Barley	plasma membrane	50.83	51.98
TraesCS6D01G272500.1	Wheat	nucleus	49.17	51.3
TraesCS6A01G291100.1	Wheat	nucleus	48.07	51.03
Zm00001d052820_P001	Maize	extracellular, mitochondrion, plasma membrane	53.87	50.91
GSMUA_Achr9P12880_001	Banana	cytosol	32.04	50.43
TraesCS6B01G321300.2	Wheat	nucleus	49.17	47.72
OQU81002	Sorghum	nucleus	39.5	42.69
PGSC0003DMT400044866	Potato	extracellular	59.12	40.07
Bra025568.1-P	Field mustard	nucleus	56.08	37.25
Bra035441.1-P	Field mustard	mitochondrion, nucleus, plastid	7.46	34.62
Os08t0492100-02	Rice	nucleus	38.67	32.11
Solyc12g035280.1.1	Tomato	cytosol, nucleus, plastid	32.87	32.08
Bra010757.1-P	Field mustard	nucleus	32.6	30.89
Bra021850.1-P	Field mustard	nucleus	30.94	30.52
Bra005496.1-P	Field mustard	nucleus	30.94	29.79
Bra022938.1-P	Field mustard	nucleus	33.43	29.66
Bra001267.1-P	Field mustard	nucleus	35.08	26.96
Bra040031.1-P	Field mustard	nucleus	35.64	26.54
Bra021062.1-P	Field mustard	nucleus	28.73	26.53
Bra029681.1-P	Field mustard	nucleus	36.19	26.15
Bra017475.1-P	Field mustard	nucleus	30.39	25.76
Bra024928.1-P	Field mustard	nucleus	29.83	25.71
Bra028973.1-P	Field mustard	nucleus	29.28	24.48
Bra026413.1-P	Field mustard	nucleus	28.45	24.35
Bra019094.1-P	Field mustard	nucleus	30.94	24.19
Bra027860.1-P	Field mustard	cytosol, nucleus, peroxisome	23.48	23.35
Bra022145.1-P	Field mustard	nucleus	29.28	23.04
Bra012254.1-P	Field mustard	nucleus	13.26	19.92
Bra017802.1-P	Field mustard	nucleus	22.1	19.61
Bra016445.1-P	Field mustard	nucleus	13.81	19.38
Bra007096.1-P	Field mustard	nucleus	13.26	18.53
Bra012350.1-P	Field mustard	nucleus	12.71	18.47
Bra024547.1-P	Field mustard	nucleus	12.15	18.41
Bra025852.1-P	Field mustard	nucleus	13.26	18.39
Bra039664.1-P	Field mustard	nucleus	20.99	18.31
Bra038113.1-P	Field mustard	nucleus	20.17	17.63
Bra007277.1-P	Field mustard	nucleus	21.55	17.37
Bra016954.1-P	Field mustard	nucleus	20.44	16.82
Bra014667.1-P	Field mustard	nucleus	13.81	16.39
Bra003651.1-P	Field mustard	nucleus	11.33	15.13
Bra010203.1-P	Field mustard	nucleus	12.43	14.75
Bra004508.1-P	Field mustard	nucleus	11.88	13.78
Bra031230.1-P	Field mustard	nucleus	11.6	13.68
Bra040485.1-P	Field mustard	nucleus	12.15	13.5
Bra012321.1-P	Field mustard	nucleus	10.77	13.49
Bra031385.1-P	Field mustard	nucleus	10.77	13.45
Bra015741.1-P	Field mustard	nucleus, plastid, vacuole	11.33	13.14
Bra030265.1-P	Field mustard	nucleus	12.43	12.3
Bra029612.1-P	Field mustard	nucleus	9.12	11.5
Bra001228.1-P	Field mustard	cytosol	10.77	10.77

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EnsemblPlantsGene:Bra039380	EnsemblPlants:Bra039380.1	EnsemblPlants:Bra039380.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
UniProt:M4FE59	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR45276	PANTHER:PTHR45276:SF1
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000253E939	SEG:seg

Description

AT3G13224 (E=2e-112) | RNA recognition motif (RRM)-containing protein

Coordinates

chrScaffold000164:+:199820..201508

Molecular Weight (calculated)

37678.2 Da

IEP (calculated)

9.047

GRAVY (calculated)

-0.775

Length

362 amino acids

Sequence
(BLAST)

001: MGSRSRNENF QSGDGASPGK IFIGGLHKDT TNTEFNKHFG KYGEITDSVI MRDRHTGLPR GFGFITFADP SVVDQVIDDT HSFNGKQVEI KRTIPKGAGS
101: GGNQSKDFKT KKIFVGGIPS SVTEDELKDF FAKYGTIVEH QIIRDHETNR SRGFGFVIFD SEEVVDELLS KGNMVDMADT KVEIKKAEPK KSSNRSPPSY
201: GSHPRGRSSF NDSYGGPYGG PYGGFDGGYG PPPGPIRSHG GPPSRFAAGY GYGRGGVGPE FGGGYGGYGG GSLGYRSEPP LGYSSRFGPY GSGFGGEGYG
301: GGGGGGGYGR GGGEGYGGYG GGPGYGGGFE SGGPGGSYEG AGGPGPYGRG YSSSSRYHPY AR

Best Arabidopsis Sequence Match ( AT3G13224.2 )
(BLAST)

001: MGSRSRNDNF QSGDGASPGK IFIGGLHKDT TNTVFNKHFG KYGEITDSVI MRDRHTGQPR GFGFITFADP SVVDKVIEDT HVINGKQVEI KRTIPKGAGG
101: NQSKDIKTKK IFVGGIPSTV TEDELKDFFA KYGNVVEHQV IRDHETNRSR GFGFVIFDSE EVVDELLSKG NMIDMADTQV EIKKAEPKKS LNRSPPSYGS
201: HPRGRSSNDS YASYGGPYGG FDGGYGHPPG PIRSHGGPAS RYAGGYGYGR GSVGPEFGGG YNNYGGGSLG GYRNEPPLGY SSRFGPYGSG FGGEGYGRGG
301: EGAYLGYPRG GGEGYGGYGG PGYGGAYESG GPGGSYEGAG GPYGRGYSSS SRYHPYAR

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LHL2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.