Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plasma membrane, extracellular
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
20408568
mitochondrion: 27297264 plasma membrane: 27341663 |
msms PMID:
27297264
doi
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU81002 | Sorghum | nucleus | 68.93 | 78.81 |
| TraesCS7A01G282600.1 | Wheat | cytosol | 65.54 | 71.71 |
| TraesCS7D01G281300.1 | Wheat | nucleus | 66.06 | 71.27 |
| TraesCS7B01G178300.1 | Wheat | nucleus | 65.54 | 70.51 |
| HORVU7Hr1G060930.1 | Barley | plasma membrane | 64.75 | 70.06 |
| VIT_19s0015g00920.t01 | Wine grape | nucleus | 54.31 | 59.77 |
| VIT_18s0117g00150.t01 | Wine grape | nucleus | 53.52 | 57.1 |
| KRH17717 | Soybean | nucleus | 51.17 | 55.68 |
| PGSC0003DMT400044868 | Potato | nucleus | 49.35 | 55.26 |
| VIT_12s0057g01280.t01 | Wine grape | nucleus | 37.08 | 55.04 |
| Solyc07g045240.2.1 | Tomato | nucleus | 49.09 | 54.81 |
| Zm00001d030579_P001 | Maize | mitochondrion | 49.35 | 54.31 |
| AT3G13224.2 | Thale cress | nucleus | 50.65 | 54.19 |
| CDY43360 | Canola | nucleus | 50.91 | 53.87 |
| CDY24201 | Canola | nucleus | 50.91 | 53.87 |
| Bra039380.1-P | Field mustard | nucleus | 50.91 | 53.87 |
| GSMUA_Achr9P12880_001 | Banana | cytosol | 30.29 | 50.43 |
| Zm00001d016349_P002 | Maize | nucleus | 42.04 | 41.93 |
| Zm00001d036966_P001 | Maize | nucleus, plasma membrane | 42.56 | 39.47 |
| Os08t0492100-02 | Rice | nucleus | 44.39 | 38.99 |
| Zm00001d046190_P001 | Maize | extracellular | 42.3 | 38.76 |
| PGSC0003DMT400044866 | Potato | extracellular | 49.09 | 35.21 |
| Zm00001d034200_P001 | Maize | nucleus | 14.62 | 32.75 |
| Solyc12g035280.1.1 | Tomato | cytosol, nucleus, plastid | 31.07 | 32.08 |
| Zm00001d053572_P002 | Maize | cytosol | 40.99 | 28.6 |
| Zm00001d034201_P001 | Maize | nucleus | 18.54 | 28.29 |
| Zm00001d032739_P001 | Maize | nucleus | 30.03 | 25.96 |
| Zm00001d007839_P001 | Maize | cytosol | 23.76 | 24.59 |
| Zm00001d019079_P001 | Maize | cytosol | 28.46 | 24.33 |
| Zm00001d007772_P001 | Maize | nucleus | 28.2 | 24.05 |
| Zm00001d011885_P008 | Maize | cytosol | 22.19 | 23.61 |
| Zm00001d014058_P002 | Maize | plastid | 29.5 | 23.44 |
| Zm00001d019084_P002 | Maize | nucleus | 27.68 | 23.35 |
| Zm00001d018730_P001 | Maize | nucleus | 22.19 | 22.73 |
| Zm00001d006704_P002 | Maize | nucleus | 27.94 | 22.11 |
| Zm00001d052212_P001 | Maize | nucleus | 8.88 | 21.12 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 28.46 | 20.15 |
| Zm00001d019086_P001 | Maize | nucleus | 27.94 | 20.11 |
| Zm00001d042641_P001 | Maize | nucleus | 14.1 | 18.31 |
| Zm00001d042133_P003 | Maize | cytosol | 16.97 | 16.33 |
| Zm00001d036789_P001 | Maize | cytosol, mitochondrion, nucleus | 11.75 | 16.13 |
| Zm00001d044469_P003 | Maize | nucleus | 18.54 | 15.88 |
| Zm00001d011336_P002 | Maize | nucleus | 18.02 | 15.4 |
| Zm00001d012238_P003 | Maize | nucleus, plasma membrane, plastid | 13.58 | 15.29 |
| Zm00001d018103_P002 | Maize | plasma membrane | 12.27 | 14.78 |
| Zm00001d040344_P001 | Maize | extracellular, plasma membrane | 17.49 | 14.76 |
| Zm00001d042042_P001 | Maize | nucleus | 13.05 | 14.71 |
| Zm00001d047753_P001 | Maize | cytosol, mitochondrion, nucleus | 10.71 | 14.7 |
| Zm00001d037209_P001 | Maize | plastid | 11.49 | 13.25 |
| Zm00001d028714_P001 | Maize | cytosol, nucleus, plasma membrane | 10.18 | 13.13 |
| Zm00001d046716_P001 | Maize | nucleus | 12.01 | 12.78 |
| Zm00001d002141_P006 | Maize | nucleus | 16.97 | 12.48 |
| Zm00001d017829_P002 | Maize | plastid | 11.23 | 12.46 |
| Zm00001d026397_P001 | Maize | nucleus, plasma membrane | 16.45 | 12.09 |
| Zm00001d051627_P002 | Maize | plastid | 11.23 | 11.68 |
Protein Annotations
| EntrezGene:100217268 | Gene3D:3.30.70.330 | MapMan:35.1 | ProteinID:AQK58144.1 | UniProt:B4FMA8 | EMBL:BT038246 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EMBL:HQ858754 | InterPro:IPR000504 |
| InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR45276 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI00017B6C29 | EnsemblPlantsGene:Zm00001d052820 | EnsemblPlants:Zm00001d052820_P001 |
| EnsemblPlants:Zm00001d052820_T001 | SEG:seg | : | : | : | : |
Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Coordinates
chr4:-:202005991..202009436
Molecular Weight (calculated)
39778.8 Da
IEP (calculated)
9.228
GRAVY (calculated)
-0.542
Length
383 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKAEARSRG RGGGGGGGGA SGNPGKIFVG GLPRDTTDAT FVRHFGQYGE IVDSVIMKDR HTSQPRGFGF ITYSDPAVVD KVIEDNHVIN GKQVEIKRTI
101: PKGSVQSSSK DFKTKKIFVG GLPSTLTEDE FKSFFARYGT VVDHQIMFDH ETKRSRGFGF IVFASEQVVD DLLANGNMVD LAGSKVEIKK AEPKKSSNAP
201: PPPVHVRNAR SAYDSGSRDH PSADNYGGMA SAYGNYRGGG FGPYRSDTGF GARLSSYGGV GDFGGAYGRY YAGLGGGYGA ASSFGYPGRF GLYGGGFGGS
301: YAGADLSGYR RGGGDESFGA PGGNPGFGGD AEESFGGPSS SGFSGTAYGG AYDPTLGGYG SASTPDMNRG SFTGGYGRYH PYG
101: PKGSVQSSSK DFKTKKIFVG GLPSTLTEDE FKSFFARYGT VVDHQIMFDH ETKRSRGFGF IVFASEQVVD DLLANGNMVD LAGSKVEIKK AEPKKSSNAP
201: PPPVHVRNAR SAYDSGSRDH PSADNYGGMA SAYGNYRGGG FGPYRSDTGF GARLSSYGGV GDFGGAYGRY YAGLGGGYGA ASSFGYPGRF GLYGGGFGGS
301: YAGADLSGYR RGGGDESFGA PGGNPGFGGD AEESFGGPSS SGFSGTAYGG AYDPTLGGYG SASTPDMNRG SFTGGYGRYH PYG
001: MGSRSRNDNF QSGDGASPGK IFIGGLHKDT TNTVFNKHFG KYGEITDSVI MRDRHTGQPR GFGFITFADP SVVDKVIEDT HVINGKQVEI KRTIPKGAGG
101: NQSKDIKTKK IFVGGIPSTV TEDELKDFFA KYGNVVEHQV IRDHETNRSR GFGFVIFDSE EVVDELLSKG NMIDMADTQV EIKKAEPKKS LNRSPPSYGS
201: HPRGRSSNDS YASYGGPYGG FDGGYGHPPG PIRSHGGPAS RYAGGYGYGR GSVGPEFGGG YNNYGGGSLG GYRNEPPLGY SSRFGPYGSG FGGEGYGRGG
301: EGAYLGYPRG GGEGYGGYGG PGYGGAYESG GPGGSYEGAG GPYGRGYSSS SRYHPYAR
101: NQSKDIKTKK IFVGGIPSTV TEDELKDFFA KYGNVVEHQV IRDHETNRSR GFGFVIFDSE EVVDELLSKG NMIDMADTQV EIKKAEPKKS LNRSPPSYGS
201: HPRGRSSNDS YASYGGPYGG FDGGYGHPPG PIRSHGGPAS RYAGGYGYGR GSVGPEFGGG YNNYGGGSLG GYRNEPPLGY SSRFGPYGSG FGGEGYGRGG
301: EGAYLGYPRG GGEGYGGYGG PGYGGAYESG GPGGSYEGAG GPYGRGYSSS SRYHPYAR
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LHL2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.