Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d002936_P010 | |
| Zm00001d012392_P001 | |
| Zm00001d026696_P005 | |
| Zm00001d049346_P001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG38359 | Sorghum | nucleus | 88.17 | 93.82 |
| Zm00001d032739_P001 | Maize | nucleus | 86.1 | 93.68 |
| TraesCS1B01G168200.1 | Wheat | nucleus | 74.27 | 79.2 |
| TraesCS1D01G147600.1 | Wheat | nucleus | 74.48 | 79.07 |
| TraesCS1A01G150600.1 | Wheat | nucleus | 74.27 | 78.85 |
| HORVU1Hr1G039790.1 | Barley | nucleus | 76.76 | 72.55 |
| GSMUA_Achr5P17700_001 | Banana | cytosol | 13.49 | 69.89 |
| GSMUA_Achr10P... | Banana | nucleus | 35.89 | 69.76 |
| VIT_07s0005g03980.t01 | Wine grape | nucleus | 53.11 | 58.99 |
| GSMUA_Achr1P10970_001 | Banana | nucleus | 52.07 | 57.57 |
| CDY12068 | Canola | nucleus | 42.74 | 57.54 |
| AT4G14300.1 | Thale cress | nucleus | 47.72 | 55.96 |
| CDX90262 | Canola | nucleus | 43.98 | 55.5 |
| AT2G33410.1 | Thale cress | nucleus | 46.47 | 55.45 |
| Bra021850.1-P | Field mustard | nucleus | 42.12 | 55.31 |
| Bra010757.1-P | Field mustard | nucleus | 43.78 | 55.24 |
| KRH07772 | Soybean | cytosol | 11.2 | 55.1 |
| Bra005496.1-P | Field mustard | nucleus | 42.95 | 55.05 |
| CDY67299 | Canola | nucleus | 43.36 | 54.86 |
| CDY17173 | Canola | nucleus | 42.74 | 54.64 |
| KRH34534 | Soybean | nucleus | 53.11 | 54.35 |
| CDY23739 | Canola | nucleus | 43.15 | 54.31 |
| CDX79527 | Canola | nucleus | 45.44 | 53.94 |
| Bra022938.1-P | Field mustard | nucleus | 45.23 | 53.43 |
| KRG92276 | Soybean | endoplasmic reticulum | 52.28 | 52.94 |
| CDX84689 | Canola | nucleus | 44.81 | 52.94 |
| CDY37724 | Canola | nucleus | 35.48 | 52.94 |
| Zm00001d034200_P001 | Maize | nucleus | 15.15 | 42.69 |
| Solyc09g072790.2.1 | Tomato | nucleus | 33.2 | 40.61 |
| PGSC0003DMT400009762 | Potato | nucleus | 33.4 | 40.55 |
| Zm00001d019079_P001 | Maize | cytosol | 35.06 | 37.72 |
| Zm00001d034201_P001 | Maize | nucleus | 19.29 | 37.05 |
| Zm00001d007772_P001 | Maize | nucleus | 34.44 | 36.97 |
| Zm00001d019084_P002 | Maize | nucleus | 34.23 | 36.34 |
| Zm00001d016349_P002 | Maize | nucleus | 28.01 | 35.16 |
| Zm00001d006704_P002 | Maize | nucleus | 34.65 | 34.5 |
| Zm00001d030579_P001 | Maize | mitochondrion | 24.48 | 33.91 |
| Zm00001d036966_P001 | Maize | nucleus, plasma membrane | 28.01 | 32.69 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 36.1 | 32.16 |
| Zm00001d046190_P001 | Maize | extracellular | 27.8 | 32.06 |
| Zm00001d007839_P001 | Maize | cytosol | 24.27 | 31.62 |
| Zm00001d019086_P001 | Maize | nucleus | 34.65 | 31.39 |
| Zm00001d018730_P001 | Maize | nucleus | 24.07 | 31.02 |
| Zm00001d052820_P001 | Maize | extracellular, mitochondrion, plasma membrane | 23.44 | 29.5 |
| Zm00001d011885_P008 | Maize | cytosol | 19.71 | 26.39 |
| Zm00001d053572_P002 | Maize | cytosol | 29.25 | 25.68 |
| Zm00001d052212_P001 | Maize | nucleus | 8.09 | 24.22 |
| Zm00001d042641_P001 | Maize | nucleus | 12.86 | 21.02 |
| Zm00001d036789_P001 | Maize | cytosol, mitochondrion, nucleus | 11.83 | 20.43 |
| Zm00001d044469_P003 | Maize | nucleus | 18.05 | 19.46 |
| Zm00001d011336_P002 | Maize | nucleus | 17.22 | 18.53 |
| Zm00001d042133_P003 | Maize | cytosol | 14.94 | 18.09 |
| Zm00001d012238_P003 | Maize | nucleus, plasma membrane, plastid | 12.66 | 17.94 |
| Zm00001d028714_P001 | Maize | cytosol, nucleus, plasma membrane | 10.79 | 17.51 |
| Zm00001d042042_P001 | Maize | nucleus | 12.24 | 17.35 |
| Zm00001d047753_P001 | Maize | cytosol, mitochondrion, nucleus | 9.96 | 17.2 |
| Zm00001d046716_P001 | Maize | nucleus | 12.45 | 16.67 |
| Zm00001d018103_P002 | Maize | plasma membrane | 10.37 | 15.72 |
| Zm00001d037209_P001 | Maize | plastid | 10.79 | 15.66 |
| Zm00001d040344_P001 | Maize | extracellular, plasma membrane | 14.11 | 14.98 |
| Zm00001d002141_P006 | Maize | nucleus | 15.77 | 14.59 |
| Zm00001d017829_P002 | Maize | plastid | 10.17 | 14.2 |
| Zm00001d026397_P001 | Maize | nucleus, plasma membrane | 14.94 | 13.82 |
| Zm00001d051627_P002 | Maize | plastid | 9.96 | 13.04 |
Protein Annotations
| EntrezGene:100280293 | Gene3D:3.30.70.330 | MapMan:35.1 | UniProt:A0A1D6GPP6 | ProteinID:AQK65145.1 | InterPro:DAZAP1_RRM2 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0019013 | GO:GO:0030529 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44291 | PANTHER:PTHR44291:SF2 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000843B0C0 | EnsemblPlantsGene:Zm00001d014058 | EnsemblPlants:Zm00001d014058_P002 | EnsemblPlants:Zm00001d014058_T002 |
| SEG:seg | : | : | : | : | : |
Description
Heterogeneous nuclear ribonucleoprotein 1
Coordinates
chr5:+:30937871..30940580
Molecular Weight (calculated)
48354.5 Da
IEP (calculated)
8.432
GRAVY (calculated)
-0.720
Length
482 amino acids
Sequence
(BLAST)
(BLAST)
001: MKYPTQTNLP PTDPNRHPLS PSLPHRTSRR ARGGGVEMES DQGKLFIGGI SWETTEEKLS EHFSAYGEVT QAAVMRDKIT GRPRGFGFVV FADPAAVDRA
101: LQDPHTLDGR TVDVKRALSR EEQQASKAAN PSGGRNSGGG GGGGGGSDAS GARTKKIFVG GLPSTLTEDG FRQYFETFGI VTDVVVMYDQ NTQRPRGFGF
201: ITFDSEDAVD RVLQKTFHDL GGKLVEVKRA LPREANPGGS GGGRSGGGGG YQSNNGHNTS SGSYDGRSDG GRYGQTQQGS GGGGYGAGAA GYGYGANPAV
301: GYGNYGAGGY GGVPAAYGGH YGNPGAAGSG YQGGHPGSNR GPWGSQAPSA YGTGGYGGSA GYSAWNNSSG GGNALNSQAP GGPAGYGSQG YGYGGYGGDP
401: SYASHGGYGA YGARIDSAGN PATGGSSGYN AGYGSGGANS GYSSAWSDPS QGGGFGGSVN GGAEGQSTYG TGYGSVQPRV AQ
101: LQDPHTLDGR TVDVKRALSR EEQQASKAAN PSGGRNSGGG GGGGGGSDAS GARTKKIFVG GLPSTLTEDG FRQYFETFGI VTDVVVMYDQ NTQRPRGFGF
201: ITFDSEDAVD RVLQKTFHDL GGKLVEVKRA LPREANPGGS GGGRSGGGGG YQSNNGHNTS SGSYDGRSDG GRYGQTQQGS GGGGYGAGAA GYGYGANPAV
301: GYGNYGAGGY GGVPAAYGGH YGNPGAAGSG YQGGHPGSNR GPWGSQAPSA YGTGGYGGSA GYSAWNNSSG GGNALNSQAP GGPAGYGSQG YGYGGYGGDP
401: SYASHGGYGA YGARIDSAGN PATGGSSGYN AGYGSGGANS GYSSAWSDPS QGGGFGGSVN GGAEGQSTYG TGYGSVQPRV AQ
001: MESDQGKLFI GGISWDTDEN LLREYFSNFG EVLQVTVMRE KATGRPRGFG FVAFSDPAVI DRVLQDKHHI DNRDVDVKRA MSREEQSPAG RSGTFNASRN
101: FDSGANVRTK KIFVGGLPPA LTSDEFRAYF ETYGPVSDAV IMIDQTTQRP RGFGFVSFDS EDSVDLVLHK TFHDLNGKQV EVKRALPKDA NPGIASGGGR
201: GSGGAGGFPG YGGSGGSGYE GRVDSNRYMQ PQNTGSGYPP YGGSGYGTGY GYGSNGVGYG GFGGYGNPAG APYGNPSVPG AGFGSGPRSS WGAQAPSGYG
301: NVGYGNAAPW GGSGGPGSAV MGQAGASAGY GSQGYGYGGN DSSYGTPSAY GAVGGRSGNM PNNHGGGGYA DALDGSGGYG NHQGNNGQAG YGGGYGSGRQ
401: AQQQ
101: FDSGANVRTK KIFVGGLPPA LTSDEFRAYF ETYGPVSDAV IMIDQTTQRP RGFGFVSFDS EDSVDLVLHK TFHDLNGKQV EVKRALPKDA NPGIASGGGR
201: GSGGAGGFPG YGGSGGSGYE GRVDSNRYMQ PQNTGSGYPP YGGSGYGTGY GYGSNGVGYG GFGGYGNPAG APYGNPSVPG AGFGSGPRSS WGAQAPSGYG
301: NVGYGNAAPW GGSGGPGSAV MGQAGASAGY GSQGYGYGGN DSSYGTPSAY GAVGGRSGNM PNNHGGGGYA DALDGSGGYG NHQGNNGQAG YGGGYGSGRQ
401: AQQQ
Arabidopsis Description
Putative RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:O22791]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.