Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G33410.1 | KRH44644 | AT3G21215.1 | 21798944 |
| AT2G33410.1 | KRH47009 | AT3G21215.1 | 21798944 |
| AT4G14300.1 | KRG90653 | AT2G16950.1 | 14756317 |
| AT4G14300.1 | KRH36099 | AT2G16950.1 | 14756317 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH75298 | Soybean | cytosol, nucleus | 24.49 | 24.24 |
| KRH13261 | Soybean | cytosol | 28.57 | 22.58 |
| KRH56541 | Soybean | nucleus | 37.76 | 18.5 |
| CDY37724 | Canola | nucleus | 54.08 | 16.41 |
| KRH34534 | Soybean | nucleus | 77.55 | 16.14 |
| KRG92276 | Soybean | endoplasmic reticulum | 77.55 | 15.97 |
| CDY12068 | Canola | nucleus | 55.1 | 15.08 |
| Bra021850.1-P | Field mustard | nucleus | 55.1 | 14.71 |
| CDY23739 | Canola | nucleus | 56.12 | 14.36 |
| Bra010757.1-P | Field mustard | nucleus | 55.1 | 14.14 |
| CDX90262 | Canola | nucleus | 55.1 | 14.14 |
| Bra005496.1-P | Field mustard | nucleus | 53.06 | 13.83 |
| CDX79527 | Canola | nucleus | 57.14 | 13.79 |
| CDY17173 | Canola | nucleus | 53.06 | 13.79 |
| Bra022938.1-P | Field mustard | nucleus | 57.14 | 13.73 |
| CDX84689 | Canola | nucleus | 57.14 | 13.73 |
| CDY67299 | Canola | nucleus | 53.06 | 13.65 |
| AT2G33410.1 | Thale cress | nucleus | 56.12 | 13.61 |
| PGSC0003DMT400044195 | Potato | nucleus | 65.31 | 13.47 |
| Solyc09g090520.2.1 | Tomato | nucleus | 65.31 | 13.47 |
| Solyc03g005680.2.1 | Tomato | nucleus | 58.16 | 13.35 |
| PGSC0003DMT400035000 | Potato | nucleus | 60.2 | 13.35 |
| VIT_05s0049g01660.t01 | Wine grape | nucleus | 62.24 | 13.15 |
| AT4G14300.1 | Thale cress | nucleus | 54.08 | 12.9 |
| KRH64318 | Soybean | nucleus | 33.67 | 12.84 |
| KRH47731 | Soybean | nucleus | 33.67 | 12.36 |
| KRH53608 | Soybean | nucleus | 30.61 | 12.2 |
| Zm00001d032739_P001 | Maize | nucleus | 55.1 | 12.19 |
| KRH73860 | Soybean | nucleus | 59.18 | 12.16 |
| KRG98573 | Soybean | nucleus | 59.18 | 12.11 |
| KRH18921 | Soybean | nucleus | 33.67 | 11.96 |
| KRH14284 | Soybean | nucleus | 58.16 | 11.92 |
| KXG38359 | Sorghum | nucleus | 55.1 | 11.92 |
| KRH52137 | Soybean | nucleus | 45.92 | 11.9 |
| KRH46297 | Soybean | nucleus | 58.16 | 11.9 |
| KRH06306 | Soybean | nucleus | 32.65 | 11.9 |
| KRH62942 | Soybean | mitochondrion | 24.49 | 11.76 |
| KRH16743 | Soybean | nucleus | 32.65 | 11.68 |
| TraesCS1B01G168200.1 | Wheat | nucleus | 53.06 | 11.5 |
| KRH14098 | Soybean | nucleus | 56.12 | 11.48 |
| KRH61448 | Soybean | nucleus | 44.9 | 11.46 |
| TraesCS1D01G147600.1 | Wheat | nucleus | 53.06 | 11.45 |
| TraesCS1A01G150600.1 | Wheat | nucleus | 53.06 | 11.45 |
| KRH74025 | Soybean | nucleus | 55.1 | 11.37 |
| Zm00001d014058_P002 | Maize | plastid | 55.1 | 11.2 |
| KRH06373 | Soybean | nucleus | 31.63 | 11.19 |
| KRH62327 | Soybean | nucleus | 31.63 | 10.8 |
| KRH53044 | Soybean | nucleus | 31.63 | 10.8 |
| KRH07154 | Soybean | nucleus | 40.82 | 10.75 |
| KRG94084 | Soybean | nucleus | 40.82 | 10.7 |
| KRH40033 | Soybean | nucleus | 29.59 | 10.66 |
| KRH23771 | Soybean | nucleus | 29.59 | 10.66 |
| KRH17717 | Soybean | nucleus | 37.76 | 10.51 |
| KRH60871 | Soybean | nucleus, plastid | 30.61 | 10.49 |
| KRH51553 | Soybean | nucleus, plastid | 30.61 | 10.49 |
| KRH47808 | Soybean | nucleus | 30.61 | 10.49 |
| KRH23293 | Soybean | nucleus | 37.76 | 10.48 |
| KRG93213 | Soybean | nucleus | 39.8 | 10.34 |
| HORVU1Hr1G039790.1 | Barley | nucleus | 53.06 | 10.2 |
| KRH47819 | Soybean | nucleus | 30.61 | 10.14 |
| KRH06384 | Soybean | nucleus | 30.61 | 9.97 |
| KRG95365 | Soybean | nucleus | 27.55 | 8.04 |
| KRH26210 | Soybean | nucleus | 35.71 | 8.01 |
| KRH67043 | Soybean | nucleus | 27.55 | 7.94 |
| KRH55109 | Soybean | nucleus | 34.69 | 7.66 |
| KRH71299 | Soybean | nucleus | 28.57 | 7.29 |
| KRH28467 | Soybean | cytosol | 26.53 | 7.12 |
| KRH50169 | Soybean | nucleus | 27.55 | 7.03 |
| KRH77004 | Soybean | nucleus | 25.51 | 6.91 |
| KRG94993 | Soybean | nucleus | 25.51 | 5.22 |
| KRH66628 | Soybean | nucleus | 25.51 | 5.14 |
| KRH14673 | Soybean | nucleus | 25.51 | 5.06 |
| KRH73477 | Soybean | nucleus | 24.49 | 4.84 |
| KRH05541 | Soybean | cytosol, endoplasmic reticulum | 15.31 | 4.63 |
| GSMUA_Achr5P17690_001 | Banana | nucleus | 9.18 | 2.23 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EMBL:ACUP02010103 | EnsemblPlantsGene:GLYMA_16G109600 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005542 | GO:GO:0005575 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016740 | InterPro:IPR000504 | InterPro:IPR012677 |
| UniProt:K7MGK5 | EnsemblPlants:KRH07772 | ProteinID:KRH07772 | ProteinID:KRH07772.1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PFscan:PS50102 | PANTHER:PTHR44291 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 |
| TMHMM:TMhelix | UniParc:UPI000294AB54 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr16:+:23645190..23645819
Molecular Weight (calculated)
11284.6 Da
IEP (calculated)
6.516
GRAVY (calculated)
-0.047
Length
98 amino acids
Sequence
(BLAST)
(BLAST)
1: MDSDQGKLFI GGISWDTTED KLKEHFGNYG DALSTSIMRE KNTGKPRGFG FVVFADPNIL DRVLEDKHVI DGRTVTLLSF FLSFLYFMFR LKILYCTF
001: MDSDQGKLFV GGISWETDED KLREHFTNYG EVSQAIVMRD KLTGRPRGFG FVIFSDPSVL DRVLQEKHSI DTREVDVKRA MSREEQQVSG RTGNLNTSRS
101: SGGDAYNKTK KIFVGGLPPT LTDEEFRQYF EVYGPVTDVA IMYDQATNRP RGFGFVSFDS EDAVDSVLHK TFHDLSGKQV EVKRALPKDA NPGGGGRSMG
201: GGGSGGYQGY GGNESSYDGR MDSNRFLQHQ SVGNGLPSYG SSGYGAGYGN GSNGAGYGAY GGYTGSAGGY GAGATAGYGA TNIPGAGYGS STGVAPRNSW
301: DTPASSGYGN PGYGSGAAHS GYGVPGAAPP TQSPSGYSNQ GYGYGGYSGS DSGYGNQAAY GVVGGRPSGG GSNNPGSGGY MGGGYGDGSW RSDPSQGYGG
401: GYNDGQGRQG Q
101: SGGDAYNKTK KIFVGGLPPT LTDEEFRQYF EVYGPVTDVA IMYDQATNRP RGFGFVSFDS EDAVDSVLHK TFHDLSGKQV EVKRALPKDA NPGGGGRSMG
201: GGGSGGYQGY GGNESSYDGR MDSNRFLQHQ SVGNGLPSYG SSGYGAGYGN GSNGAGYGAY GGYTGSAGGY GAGATAGYGA TNIPGAGYGS STGVAPRNSW
301: DTPASSGYGN PGYGSGAAHS GYGVPGAAPP TQSPSGYSNQ GYGYGGYSGS DSGYGNQAAY GVVGGRPSGG GSNNPGSGGY MGGGYGDGSW RSDPSQGYGG
401: GYNDGQGRQG Q
Arabidopsis Description
RNP1Heterogeneous nuclear ribonucleoprotein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W034]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.