CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1
nucleus 3
plastid 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	peroxisome

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91301
KRG97345
KRH02428
KRH31570
KRH35520
KRH50633

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21215.1	KRH02428	AT3G17310.1	21798944
AT3G21215.1	KRH50633	AT3G17310.1	21798944
AT3G21215.1	KRG91301	AT3G22440.1	21798944
AT3G21215.1	KRH35520	AT3G22440.1	21798944
AT3G21215.1	KRG97345	AT4G13850.1	21798944
AT3G21215.1	KRH31570	AT4G13850.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44644	Soybean	nucleus	80.57	88.96
CDY37307	Canola	nucleus	47.71	78.77
VIT_09s0018g01880.t01	Wine grape	nucleus	66.57	77.93
Bra023895.1-P	Field mustard	nucleus	62.57	71.57
GSMUA_Achr2P05000_001	Banana	cytosol	61.71	71.52
GSMUA_Achr9P19610_001	Banana	cytosol	60.29	68.95
Solyc03g123840.2.1	Tomato	nucleus	62.57	68.44
AT3G21215.1	Thale cress	nucleus	64.86	66.96
PGSC0003DMT400023680	Potato	plastid	62.57	65.96
CDY27533	Canola	nucleus	63.71	65.01
TraesCS7A01G287800.1	Wheat	nucleus, plastid	59.14	64.89
TraesCS7D01G290200.1	Wheat	nucleus, plastid	58.86	64.58
TraesCS7B01G182400.1	Wheat	nucleus, plastid	58.29	63.95
Zm00001d049346_P001	Maize	plastid	58.57	63.66
EES14795	Sorghum	plastid	57.71	63.12
HORVU7Hr1G067800.6	Barley	plastid	58.86	59.88
CDY06428	Canola	nucleus	44.0	49.84
KRH47143	Soybean	nucleus	23.43	30.94
KRH44168	Soybean	nucleus	23.71	29.96
KRH28438	Soybean	nucleus	26.0	26.92
KRH77037	Soybean	nucleus	24.86	26.13

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.2	EMBL:ACUP02004132	EnsemblPlantsGene:GLYMA_07G003500	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	UniProt:K7KYT7	EnsemblPlants:KRH47009
ProteinID:KRH47009	ProteinID:KRH47009.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR45381
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000294E524	SEG:seg

Description

hypothetical protein

Coordinates

chr7:+:267786..269409

Molecular Weight (calculated)

38299.0 Da

IEP (calculated)

7.255

GRAVY (calculated)

-0.224

Length

350 amino acids

Sequence
(BLAST)

001: MAGTGIHPYH QQWAPAAAAP PPPPAAAGGP PPHPGEEVRT IFITGLPEDV KERELQNLLR WLPGFEASQL NFKAEKPMGF ALFSAPHQAL AAKDILQDML
101: FDPDTKSVLH TEMAKKNLFV KRACLVGIGA ADAGGAFDQS KRLRTAGDYT HSGYTSPSPF HPPPPPVWGP HGYMAPPPPP PPYDPYAGYP VAPVPMPTPA
201: PIPAPSTYVP VQNTKDNPPC NTLFIGNLGE NINEEEVRGL FSVQPGFKQM KILRQERHTV CFIEFEDVNS ATNVHHNLQG AVIPSSGSIG MRIQYPFLYY
301: QYPRCFLSDF APLTCSLSKT GCSTGNYTRP FCLNACICKC TMIFFLFYCL

Best Arabidopsis Sequence Match ( AT3G21215.3 )
(BLAST)

001: MAGAGIHPYH QQWPPAGAPP PPAAVSSAAP PHPPPIHHHP PPPPVLVDNH NRPPYDELRT IFIAGLPDDV KERELLNLLR WLPGYEASQV NFKGEKPMGF
101: ALFSTAQFAM AAKDTLQHMV FDAESKSVIH TEMAKKNLFV KRGIVGDSNA YDQSKRLRTG GDCTHSVYSP SPFHPPPPPV WGPPHGYMAP APPPYDPYAG
201: YHAPPVPMPT PPPIAAPSSY VPVQNIKDNP PCNTLFIGNL GENINEEELR SLLSAQPGFK QMKILRQERH TVCFIEFEDV NSATNVHHNL QGAVIPSSGS
301: IGMRIQYPYI LLLFLII

Arabidopsis Description

AT3G21215 protein [Source:UniProtKB/TrEMBL;Acc:Q9ASW4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.