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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • plastid 4
  • mitochondrion 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:golgi, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:nucleus
iPSORT:plastid
MultiLoc:nucleus
Plant-mPloc:plastid
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:golgi
YLoc:plastid
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400023680 Potato plastid 90.94 87.65
CDY37307 Canola nucleus 52.5 79.25
VIT_09s0018g01880.t01 Wine grape nucleus 73.12 78.26
Bra023895.1-P Field mustard nucleus 69.69 72.88
KRH44644 Soybean nucleus 67.5 68.14
GSMUA_Achr2P05000_001 Banana cytosol 63.12 66.89
CDY27533 Canola nucleus 70.0 65.31
AT3G21215.1 Thale cress nucleus 69.06 65.19
Zm00001d049346_P001 Maize plastid 64.69 64.29
TraesCS7A01G287800.1 Wheat nucleus, plastid 64.06 64.26
TraesCS7B01G182400.1 Wheat nucleus, plastid 63.44 63.64
TraesCS7D01G290200.1 Wheat nucleus, plastid 63.44 63.64
GSMUA_Achr9P19610_001 Banana cytosol 60.62 63.4
KRH47009 Soybean nucleus 68.44 62.57
EES14795 Sorghum plastid 61.56 61.56
HORVU7Hr1G067800.6 Barley plastid 64.06 59.59
CDY06428 Canola nucleus 45.94 47.57
Solyc02g093120.2.1 Tomato nucleus 16.25 27.37
Solyc03g121450.2.1 Tomato nucleus 23.75 27.34
Protein Annotations
EnsemblPlants:Solyc03g123840.2.1EnsemblPlantsGene:Solyc03g123840.2Gene3D:3.30.70.330GO:GO:0003674GO:GO:0003676GO:GO:0003723
GO:GO:0003729GO:GO:0005488InterPro:IPR000504InterPro:IPR012677InterPro:Nucleotide-bd_a/b_plait_sfInterPro:RBD_domain_sf
InterPro:RRM_domPANTHER:PTHR45381PFAM:PF00076PFscan:PS50102SEG:segSMART:SM00360
SUPFAM:SSF54928UniParc:UPI0002765DF5UniProt:K4BN82MapMan:35.2::
Description
No Description!
Coordinates
chr3:+:70544371..70548965
Molecular Weight (calculated)
35245.3 Da
IEP (calculated)
6.990
GRAVY (calculated)
-0.205
Length
320 amino acids
Sequence
(BLAST)
001: MAGNAIHPFH QQWPPAPAPA PPLPSGPPPH HHHHSMPIDE VRTIFISGLP QDVKERELVN LLRWLPGYEA SQLNFKGELP MGFALFSNHQ CAIGAKDAIQ
101: GLVFDTEGKC VLHTEMAKKN LFVKRGIVVD SNAHDQSKRM RTGGDYTHSG YSSPSPFHPP PAPVWAPHGY ITQAPPPYNP YGGYPVAHMP MAAPAPVPAP
201: SSYAPVQNTK DNPPCNTLFI GNLGENINEE ELRGLISGQP GFKQMKVLRQ ERHTVCFIEF EDVNSATNVH HTLQGAVIPS SGSVGMRIQY PFFLFSCLIY
301: SLPELDISVI LFTLFLPLLF
Best Arabidopsis Sequence Match ( AT3G21215.3 )
(BLAST)
001: MAGAGIHPYH QQWPPAGAPP PPAAVSSAAP PHPPPIHHHP PPPPVLVDNH NRPPYDELRT IFIAGLPDDV KERELLNLLR WLPGYEASQV NFKGEKPMGF
101: ALFSTAQFAM AAKDTLQHMV FDAESKSVIH TEMAKKNLFV KRGIVGDSNA YDQSKRLRTG GDCTHSVYSP SPFHPPPPPV WGPPHGYMAP APPPYDPYAG
201: YHAPPVPMPT PPPIAAPSSY VPVQNIKDNP PCNTLFIGNL GENINEEELR SLLSAQPGFK QMKILRQERH TVCFIEFEDV NSATNVHHNL QGAVIPSSGS
301: IGMRIQYPYI LLLFLII
Arabidopsis Description
AT3G21215 protein [Source:UniProtKB/TrEMBL;Acc:Q9ASW4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.