Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 4
- mitochondrion 1
- golgi 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Solyc05g053260.2.1 | |
Solyc05g053780.2.1 | |
Solyc09g076050.2.1 | |
Solyc09g092320.2.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400023680 | Potato | plastid | 90.94 | 87.65 |
CDY37307 | Canola | nucleus | 52.5 | 79.25 |
VIT_09s0018g01880.t01 | Wine grape | nucleus | 73.12 | 78.26 |
Bra023895.1-P | Field mustard | nucleus | 69.69 | 72.88 |
KRH44644 | Soybean | nucleus | 67.5 | 68.14 |
GSMUA_Achr2P05000_001 | Banana | cytosol | 63.12 | 66.89 |
CDY27533 | Canola | nucleus | 70.0 | 65.31 |
AT3G21215.1 | Thale cress | nucleus | 69.06 | 65.19 |
Zm00001d049346_P001 | Maize | plastid | 64.69 | 64.29 |
TraesCS7A01G287800.1 | Wheat | nucleus, plastid | 64.06 | 64.26 |
TraesCS7B01G182400.1 | Wheat | nucleus, plastid | 63.44 | 63.64 |
TraesCS7D01G290200.1 | Wheat | nucleus, plastid | 63.44 | 63.64 |
GSMUA_Achr9P19610_001 | Banana | cytosol | 60.62 | 63.4 |
KRH47009 | Soybean | nucleus | 68.44 | 62.57 |
EES14795 | Sorghum | plastid | 61.56 | 61.56 |
HORVU7Hr1G067800.6 | Barley | plastid | 64.06 | 59.59 |
CDY06428 | Canola | nucleus | 45.94 | 47.57 |
Solyc02g093120.2.1 | Tomato | nucleus | 16.25 | 27.37 |
Solyc03g121450.2.1 | Tomato | nucleus | 23.75 | 27.34 |
Protein Annotations
EnsemblPlants:Solyc03g123840.2.1 | EnsemblPlantsGene:Solyc03g123840.2 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
GO:GO:0003729 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
InterPro:RRM_dom | PANTHER:PTHR45381 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 |
SUPFAM:SSF54928 | UniParc:UPI0002765DF5 | UniProt:K4BN82 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr3:+:70544371..70548965
Molecular Weight (calculated)
35245.3 Da
IEP (calculated)
6.990
GRAVY (calculated)
-0.205
Length
320 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGNAIHPFH QQWPPAPAPA PPLPSGPPPH HHHHSMPIDE VRTIFISGLP QDVKERELVN LLRWLPGYEA SQLNFKGELP MGFALFSNHQ CAIGAKDAIQ
101: GLVFDTEGKC VLHTEMAKKN LFVKRGIVVD SNAHDQSKRM RTGGDYTHSG YSSPSPFHPP PAPVWAPHGY ITQAPPPYNP YGGYPVAHMP MAAPAPVPAP
201: SSYAPVQNTK DNPPCNTLFI GNLGENINEE ELRGLISGQP GFKQMKVLRQ ERHTVCFIEF EDVNSATNVH HTLQGAVIPS SGSVGMRIQY PFFLFSCLIY
301: SLPELDISVI LFTLFLPLLF
101: GLVFDTEGKC VLHTEMAKKN LFVKRGIVVD SNAHDQSKRM RTGGDYTHSG YSSPSPFHPP PAPVWAPHGY ITQAPPPYNP YGGYPVAHMP MAAPAPVPAP
201: SSYAPVQNTK DNPPCNTLFI GNLGENINEE ELRGLISGQP GFKQMKVLRQ ERHTVCFIEF EDVNSATNVH HTLQGAVIPS SGSVGMRIQY PFFLFSCLIY
301: SLPELDISVI LFTLFLPLLF
001: MAGAGIHPYH QQWPPAGAPP PPAAVSSAAP PHPPPIHHHP PPPPVLVDNH NRPPYDELRT IFIAGLPDDV KERELLNLLR WLPGYEASQV NFKGEKPMGF
101: ALFSTAQFAM AAKDTLQHMV FDAESKSVIH TEMAKKNLFV KRGIVGDSNA YDQSKRLRTG GDCTHSVYSP SPFHPPPPPV WGPPHGYMAP APPPYDPYAG
201: YHAPPVPMPT PPPIAAPSSY VPVQNIKDNP PCNTLFIGNL GENINEEELR SLLSAQPGFK QMKILRQERH TVCFIEFEDV NSATNVHHNL QGAVIPSSGS
301: IGMRIQYPYI LLLFLII
101: ALFSTAQFAM AAKDTLQHMV FDAESKSVIH TEMAKKNLFV KRGIVGDSNA YDQSKRLRTG GDCTHSVYSP SPFHPPPPPV WGPPHGYMAP APPPYDPYAG
201: YHAPPVPMPT PPPIAAPSSY VPVQNIKDNP PCNTLFIGNL GENINEEELR SLLSAQPGFK QMKILRQERH TVCFIEFEDV NSATNVHHNL QGAVIPSSGS
301: IGMRIQYPYI LLLFLII
Arabidopsis Description
AT3G21215 protein [Source:UniProtKB/TrEMBL;Acc:Q9ASW4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.