Factsheet for PGSC0003DMT400023680

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 4
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400040748
PGSC0003DMT400053017
PGSC0003DMT400077344

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21215.1	PGSC0003DMT400077344	AT3G22440.1	21798944
AT3G21215.1	PGSC0003DMT400040748	AT4G13850.1	21798944
AT3G21215.1	PGSC0003DMT400053017	AT4G13850.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g123840.2.1	Tomato	nucleus	87.65	90.94
CDY37307	Canola	nucleus	50.6	79.25
VIT_09s0018g01880.t01	Wine grape	nucleus	70.48	78.26
Bra023895.1-P	Field mustard	nucleus	66.87	72.55
KRH44644	Soybean	nucleus	65.06	68.14
GSMUA_Achr2P05000_001	Banana	cytosol	60.24	66.23
CDY27533	Canola	nucleus	68.07	65.89
AT3G21215.1	Thale cress	nucleus	67.17	65.78
TraesCS7A01G287800.1	Wheat	nucleus, plastid	61.14	63.64
TraesCS7B01G182400.1	Wheat	nucleus, plastid	60.54	63.01
TraesCS7D01G290200.1	Wheat	nucleus, plastid	60.54	63.01
GSMUA_Achr9P19610_001	Banana	cytosol	57.83	62.75
KRH47009	Soybean	nucleus	65.96	62.57
Zm00001d049346_P001	Maize	plastid	60.54	62.42
EES14795	Sorghum	plastid	59.04	61.25
HORVU7Hr1G067800.6	Barley	plastid	61.14	59.01
CDY06428	Canola	nucleus	44.88	48.22
PGSC0003DMT400006410	Potato	nucleus	24.1	28.78
PGSC0003DMT400010226	Potato	nucleus	25.6	26.9

Protein Annotations

EntrezGene:102579827	Gene3D:3.30.70.330	MapMan:35.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR000504
InterPro:IPR012677	UniProt:M1AIT5	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	EnsemblPlantsGene:PGSC0003DMG400009160	PGSC:PGSC0003DMG400009160
EnsemblPlants:PGSC0003DMT400023680	PFscan:PS50102	PANTHER:PTHR45381	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	TMHMM:TMhelix	UniParc:UPI0002955C2B	SEG:seg	:	:

Description

RNA-binding protein with multiple splicing [Source:PGSC_GENE;Acc:PGSC0003DMG400009160]

Coordinates

chr3:+:61839334..61845215

Molecular Weight (calculated)

36563.9 Da

IEP (calculated)

6.986

GRAVY (calculated)

-0.163

Length

332 amino acids

Sequence
(BLAST)

001: MAGNAIHPFH QQWPPAPAPP LPSGPPPHHH HHSMPIDEVR TIFISGLPQD VKERELVNLL RWLPGYEASQ LNFKGELPMG FALFSNHQCA IGAKDAIQGL
101: VFDTEGKCVL HTEMAKKNLF VKRGIVADSN AHDQSKRMRT GGDYTHSGYS SPSPFHPPPA PVWAPHGYIT QAPPPYNPYG GYPVAHMPMA APAPVPAPSS
201: YAPVQNTKDN PPCNTLFIGN LGENINEEEL RGLISGQPGF KQMKVLRQER HTVCFIEFED VNSATNVHHS LQGAVIPSSG SVGMRIQYPF FLFSCLIYGL
301: PELDISVILF TLFLPLYCFS GLSLTVYLIA WT

Best Arabidopsis Sequence Match ( AT3G21215.3 )
(BLAST)

001: MAGAGIHPYH QQWPPAGAPP PPAAVSSAAP PHPPPIHHHP PPPPVLVDNH NRPPYDELRT IFIAGLPDDV KERELLNLLR WLPGYEASQV NFKGEKPMGF
101: ALFSTAQFAM AAKDTLQHMV FDAESKSVIH TEMAKKNLFV KRGIVGDSNA YDQSKRLRTG GDCTHSVYSP SPFHPPPPPV WGPPHGYMAP APPPYDPYAG
201: YHAPPVPMPT PPPIAAPSSY VPVQNIKDNP PCNTLFIGNL GENINEEELR SLLSAQPGFK QMKILRQERH TVCFIEFEDV NSATNVHHNL QGAVIPSSGS
301: IGMRIQYPYI LLLFLII

Arabidopsis Description

AT3G21215 protein [Source:UniProtKB/TrEMBL;Acc:Q9ASW4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.