Factsheet for GSMUA_Achr2P05000_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P12700_001
GSMUA_Achr4P16080_001
GSMUA_Achr4P28440_001
GSMUA_Achr7P01520_001
GSMUA_Achr7P02750_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21215.1	GSMUA_Achr10P...	AT3G17310.1	21798944
AT3G21215.1	GSMUA_Achr2P12700_001	AT3G22440.1	21798944
AT3G21215.1	GSMUA_Achr4P28440_001	AT3G22440.1	21798944
AT3G21215.1	GSMUA_Achr7P01520_001	AT3G22440.1	21798944
AT3G21215.1	GSMUA_AchrUn_...	AT3G22440.1	21798944
AT3G21215.1	GSMUA_Achr4P16080_001	AT4G13850.1	21798944
AT3G21215.1	GSMUA_Achr7P02750_001	AT4G13850.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P19610_001	Banana	cytosol	83.11	82.03
VIT_09s0018g01880.t01	Wine grape	nucleus	70.2	70.9
CDY37307	Canola	nucleus	49.34	70.28
KRH44644	Soybean	nucleus	70.2	66.88
TraesCS7D01G290200.1	Wheat	nucleus, plastid	69.21	65.52
Zm00001d049346_P001	Maize	plastid	69.54	65.22
TraesCS7A01G287800.1	Wheat	nucleus, plastid	68.87	65.2
Bra023895.1-P	Field mustard	nucleus	65.89	65.03
TraesCS7B01G182400.1	Wheat	nucleus, plastid	68.54	64.89
EES14795	Sorghum	plastid	67.88	64.06
Solyc03g123840.2.1	Tomato	nucleus	66.89	63.12
KRH47009	Soybean	nucleus	71.52	61.71
AT3G21215.1	Thale cress	nucleus	68.87	61.36
PGSC0003DMT400023680	Potato	plastid	66.23	60.24
HORVU7Hr1G067800.6	Barley	plastid	68.21	59.88
CDY27533	Canola	nucleus	66.89	58.89
CDY06428	Canola	nucleus	45.7	44.66
GSMUA_Achr10P...	Banana	nucleus	13.24	31.75
GSMUA_Achr9P11330_001	Banana	nucleus	28.15	26.65
GSMUA_Achr2P16620_001	Banana	plastid	26.16	24.69
GSMUA_Achr10P...	Banana	nucleus	19.54	22.78

Protein Annotations

EnsemblPlants:GSMUA_Achr2P05000_001	EnsemblPlants:GSMUA_Achr2T05000_001	EnsemblPlantsGene:GSMUA_Achr2G05000_001	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR45381	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI000296ACFD	UniProt:M0S591	MapMan:35.2	:	:

Description

proline rich protein 3, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr2G05000_001]

Coordinates

chr2:+:10219723..10224068

Molecular Weight (calculated)

33183.4 Da

IEP (calculated)

6.862

GRAVY (calculated)

-0.425

Length

302 amino acids

Sequence
(BLAST)

001: MAGAGMHPYH QQWVPPPAPA VAPPVPVDAP NRPPADEIRT VFITGLPGDV KERELHNLLR WLPGFEASQI NFKAEQPMGF ALFSTAQHAI AAKDALQDLE
101: FDVEMKSALH TEMAKKNLFV KRGVASESSS IDQSKRLRTG GDYTHAGYAA PPFHPQPTPV WGNPGGYIAP HPPPPYDPYG GYQVPQVAMT TPPPLPASSR
201: YAPVQNNKDN PPCNTLFIGN LGENVNEEEV RGLFSVQPGF KQMKILRQER NTVCFIEFED LNSATTVHQN LQGAVLTSSG RGGMRIQYPF FFTTFHQSLL
301: SS

Best Arabidopsis Sequence Match ( AT3G21215.3 )
(BLAST)

001: MAGAGIHPYH QQWPPAGAPP PPAAVSSAAP PHPPPIHHHP PPPPVLVDNH NRPPYDELRT IFIAGLPDDV KERELLNLLR WLPGYEASQV NFKGEKPMGF
101: ALFSTAQFAM AAKDTLQHMV FDAESKSVIH TEMAKKNLFV KRGIVGDSNA YDQSKRLRTG GDCTHSVYSP SPFHPPPPPV WGPPHGYMAP APPPYDPYAG
201: YHAPPVPMPT PPPIAAPSSY VPVQNIKDNP PCNTLFIGNL GENINEEELR SLLSAQPGFK QMKILRQERH TVCFIEFEDV NSATNVHHNL QGAVIPSSGS
301: IGMRIQYPYI LLLFLII

Arabidopsis Description

AT3G21215 protein [Source:UniProtKB/TrEMBL;Acc:Q9ASW4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.