CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX92125
CDX95858
CDY06468
CDY08312
CDY34252
CDY38318
CDY46317
CDY47311
CDY47314
CDY53035

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21215.1	CDX92125	AT3G17310.1	21798944
AT3G21215.1	CDX95858	AT3G17310.1	21798944
AT3G21215.1	CDY34252	AT3G22440.1	21798944
AT3G21215.1	CDY38318	AT3G22440.1	21798944
AT3G21215.1	CDY46317	AT3G22440.1	21798944
AT3G21215.1	CDY06468	AT4G13850.1	21798944
AT3G21215.1	CDY08312	AT4G13850.1	21798944
AT3G21215.1	CDY47311	AT4G13850.1	21798944
AT3G21215.1	CDY47314	AT4G13850.1	21798944
AT3G21215.1	CDY53035	AT4G13850.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37307	Canola	nucleus	39.48	57.55
VIT_09s0018g01880.t01	Wine grape	nucleus	48.87	50.5
AT3G21215.1	Thale cress	nucleus	55.02	50.15
KRH44644	Soybean	nucleus	49.84	48.58
CDY27533	Canola	nucleus	53.4	48.1
Solyc03g123840.2.1	Tomato	nucleus	47.57	45.94
GSMUA_Achr2P05000_001	Banana	cytosol	44.66	45.7
PGSC0003DMT400023680	Potato	plastid	48.22	44.88
GSMUA_Achr9P19610_001	Banana	cytosol	43.69	44.12
KRH47009	Soybean	nucleus	49.84	44.0
TraesCS7A01G287800.1	Wheat	nucleus, plastid	44.66	43.26
EES14795	Sorghum	plastid	44.66	43.12
TraesCS7D01G290200.1	Wheat	nucleus, plastid	44.34	42.95
TraesCS7B01G182400.1	Wheat	nucleus, plastid	43.37	42.01
Zm00001d049346_P001	Maize	plastid	43.69	41.93
HORVU7Hr1G067800.6	Barley	plastid	44.01	39.53
CDX97508	Canola	nucleus	20.06	23.13
CDY23631	Canola	nucleus	20.06	22.96
CDY22555	Canola	nucleus	20.71	19.34

Protein Annotations

EnsemblPlants:CDY06428	EnsemblPlantsGene:GSBRNA2T00122441001	Gene3D:3.30.70.330	GO:A0A078F3Y5	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR45381	PFAM:PF00076	PFscan:PS50102	ProteinID:CDY06428	ProteinID:CDY06428.1	SEG:seg
SUPFAM:SSF54928	UniParc:UPI0004EE64D4	MapMan:35.2	:	:	:

Description

BnaC05g31020D

Coordinates

chrLK031969:-:825760..828402

Molecular Weight (calculated)

35191.0 Da

IEP (calculated)

6.900

GRAVY (calculated)

-0.223

Length

309 amino acids

Sequence
(BLAST)

001: MMISYTSFES VVQLRTIFIT GLPDDVKERE LLNLLRWLPG YEASQVNFKG EKAHGFFSFL HGSVCIGSQR CSSEMAKKNL FVKIVSLEML GIQSKRLRIS
101: GDCTLFYQKE ISILNVIYEL LPYSNKYMAS TPPPYDTYAG YHAPSVPMPP PTPVAAPSSY VPVQNAKDNP PCNTLFIGNL PENINEEELW SLLSSSQESS
201: AQLYFLSYRQ PGFNQMKILR QERHTVCFIE FEDVNSATNV HHNLQGAVIP SSESIWEEEG RRRPFFLSFS ECKWSSGSLD ISVVPWRGMY SLLYLAGSHH
301: LHPFHSRHF

Best Arabidopsis Sequence Match ( AT3G21215.2 )
(BLAST)

001: MAGAGIHPYH QQWPPAGAPP PPAAVSSAAP PHPPPIHHHP PPPPVLVDNH NRPPYDELRT IFIAGLPDDV KERELLNLLR WLPGYEASQV NFKGEKPMGF
101: ALFSTAQFAM AAKDTLQHMV FDAESKSVIH TEMAKKNLFV KRGIVGDSNA YDQSKRLRTG GDCTHSVYSP SPFHPPPPPV WGPPHGYMAP APPPYDPYAG
201: YHAPPVPMPT PPPIAAPSSY VPVQNIKDNP PCNTLFIGNL GENINEEELR SLLSAQPGFK QMKILRQERH TVCFIEFEDV NSATNVHHNL QGAVIPSSGS
301: IGMRIQYSKN PYGKRKEGGG YSFFPSPSAN GAQGALTYQ

Arabidopsis Description

AT3G21215 protein [Source:UniProtKB/TrEMBL;Acc:Q9ASW4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.