CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73279
CDX90948
CDX94822
CDX96615
CDX97257
CDY00860
CDY01349
CDY01921
CDY06214
CDY09972
CDY09974
CDY15081
CDY17450
CDY29496
CDY31508
CDY31859
CDY33653
CDY43301
CDY64806
CDY66247

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22440.1	CDY06214	AT1G06450.1	21798944
AT3G22440.1	CDY09972	AT1G06450.1	21798944
AT3G22440.1	CDY09974	AT1G06450.1	21798944
AT3G22440.1	CDX96615	AT1G20880.1	21798944
AT3G22440.1	CDY01349	AT1G20880.1	21798944
AT3G22440.1	CDY29496	AT1G20880.1	21798944
AT3G22440.1	CDY31508	AT1G20880.1	21798944
AT3G22440.1	CDY31859	AT1G20880.1	21798944
AT3G22440.1	CDY33653	AT1G20880.1	21798944
AT3G22440.1	CDX73279	AT1G33470.1	21798944
AT3G22440.1	CDX94822	AT2G04400.1	15714319
AT3G22440.1	CDY00860	AT2G04400.1	15714319
AT3G22440.1	CDY15081	AT2G04400.1	15714319
AT3G22440.1	CDY17450	AT2G04400.1	15714319
AT3G22440.1	CDY43301	AT2G04400.1	15714319
AT3G22440.1	CDY66247	AT2G04400.1	15714319
AT3G22440.1	CDX90948	AT4G02150.1	21798944
AT3G22440.1	CDX97257	AT4G02150.1	21798944
AT3G22440.1	CDY01921	AT4G02150.1	21798944
AT3G22440.1	CDY64806	AT4G02150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023825.1-P	Field mustard	cytosol, nucleus, plastid	99.62	97.38
CDY46317	Canola	cytosol, nucleus, plastid	97.51	96.95
AT3G22440.1	Thale cress	cytosol, nucleus, plastid	90.04	88.35
VIT_05s0020g03470.t01	Wine grape	nucleus	69.35	69.35
KRG91301	Soybean	cytosol	67.05	66.79
KRH35520	Soybean	cytosol	67.82	66.79
Solyc09g076050.2.1	Tomato	nucleus	65.33	66.34
PGSC0003DMT400077344	Potato	nucleus	64.56	65.56
CDY38318	Canola	nucleus	66.09	64.97
GSMUA_Achr2P12700_001	Banana	nucleus	50.77	54.19
GSMUA_Achr7P01520_001	Banana	nucleus	50.0	53.48
GSMUA_Achr4P28440_001	Banana	cytosol	28.93	49.19
GSMUA_AchrUn_...	Banana	cytosol, nucleus	22.03	49.15
Os07t0173200-02	Rice	cytosol	45.59	44.57
Os03t0794900-01	Rice	nucleus	45.02	42.73
Zm00001d007835_P002	Maize	cytosol, endoplasmic reticulum, nucleus	44.25	39.97
HORVU5Hr1G104870.1	Barley	cytosol	42.34	39.82
Zm00001d018911_P001	Maize	cytosol	45.59	39.21
TraesCS5D01G442300.1	Wheat	cytosol	41.38	39.13
TraesCS5A01G434500.1	Wheat	cytosol	41.38	38.99
TraesCS5B01G437500.2	Wheat	cytosol	41.38	38.92
KXG34492	Sorghum	nucleus	45.4	38.35
CDY00062	Canola	cytosol, mitochondrion, nucleus, plastid	12.64	30.99
CDY67200	Canola	cytosol, nucleus	7.47	27.86
CDY05684	Canola	cytosol	27.01	27.27
CDY48750	Canola	cytosol	27.2	26.95
CDY00066	Canola	cytosol	26.25	25.66
CDY55572	Canola	nucleus	17.24	25.14
CDX69452	Canola	cytosol	21.07	24.39
HORVU3Hr1G033190.1	Barley	nucleus	4.6	22.64
CDY19713	Canola	cytosol	13.03	22.37
CDY12290	Canola	cytosol	18.77	22.02
CDY67951	Canola	cytosol	19.35	21.91
CDX99994	Canola	peroxisome	13.6	21.26
CDX99996	Canola	extracellular	5.75	18.63
CDY05835	Canola	cytosol, nucleus, plastid	12.07	17.55
CDX71688	Canola	nucleus	17.24	15.38
CDY38847	Canola	nucleus, plastid	17.05	14.93
CDY32645	Canola	nucleus	16.67	14.92
CDX86173	Canola	cytosol	18.2	11.0
CDX80668	Canola	cytosol, mitochondrion, plasma membrane	18.2	10.65
CDX86307	Canola	nucleus	26.63	9.31
CDX85335	Canola	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	27.2	8.78
CDX99995	Canola	cytosol, nucleus, peroxisome	4.6	5.01
CDY19712	Canola	cytosol, nucleus, peroxisome	4.41	4.8

Protein Annotations

EnsemblPlants:CDY34252	EnsemblPlantsGene:GSBRNA2T00056270001	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150	GO:GO:0009791
GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	InterPro:Frigida	PANTHER:PTHR31791	PANTHER:PTHR31791:SF2
PFAM:PF07899	ProteinID:CDY34252	ProteinID:CDY34252.1	SEG:seg	UniParc:UPI0004EF04A7	UniProt:A0A078H9C0
MapMan:35.1	:	:	:	:	:

Description

BnaA01g24690DFRIGIDA-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078H9C0]

Coordinates

chrLK032331:-:301077..303346

Molecular Weight (calculated)

57739.1 Da

IEP (calculated)

7.634

GRAVY (calculated)

-0.439

Length

522 amino acids

Sequence
(BLAST)

001: MGSVSDPGEL TELAQPSFEE FQKQTSLMTS CTLLWKELSD HFTTLEENLM KKSEALKEMI GALDSQTQSS LESLKRREAT IERSVEIVAG KVGERARAAL
101: ESLEKARDGG DDGGGGGESL CLKMDARGFW SFVTARKKEL EGLRSQIPAA LVDCVDPAML VLEAISEVFP VDKRGSGEKM TNDFGWACVV ILESLAPVMV
201: DPVIGKTRLL VTPSVKEKAK EIAETWKASL EERGRVENVK TPDVHTFLQH LVTFGIVKSE DLGLYRKLVV GSAWRKQMPK LAVLVGLGDQ MPDMIEELIS
301: RGQQLDAVHF TYEVGLVDKF PPVPLLKAYL RDAKKTVAED PSNTGRASHL VARKEQSALK AVLKCIEEYK LEEEFPPENL KKRLEQLEKT KTEKRKPAAV
401: PANKRTRASY NGPMPPAKAG RITNAYVSSF PFIRSPSHSP QYASPAAAYP SPPTTVYSNR SPPYPYSPEL IPASYQASPI GYPAYNGYCN GPVPVPAPAP
501: QVYHPHYPQQ HHQHAHHQQA YY

Best Arabidopsis Sequence Match ( AT3G22440.1 )
(BLAST)

001: MGSVPDPGEL TELAQPSFEE FQKQTSLMTS CTLLWQELSD HFTSLEQNLM KKSEALKQMI ETLDNQTQTS LESLKRREVT IDHSVEIVAG KVGERARAAL
101: ESLEKARDGC GDGSNDDSGD VDDEEGLLSA LKSLCLKMDA RGFWNFVTAR KKELENLRSK IPAALVDCVD PAMLVLEAIS EVFPVDTRGD KVSNDYGWAC
201: VVILESLTPV IVDPVIGKSR LLVTPSVKEK AKEIAETWKK SLEERGRIEN VKTPDVHTFL QHLVTFGIVK SEDLALYRKL VVGSAWRKQM PKLAVSVGLG
301: DQMPDMIEEL ISRGQQLDAV HFTYEVGLVD KFPPVPLLKA YLRDAKKSAA SIMEDSSNTG RATHLVARKE QSALKAVLKC IEEYKLEEEF PPENLKKRLD
401: QLEKTKTEKR KPAAVPANKR TRASYNGPMP PAKAGRITNA YVSSFPFIRS PSHSPQYASP AAYPSPPTTV YSNRSPPYPY SPEIIPGSYQ GSPIGYPAYN
501: GYCNGPVPAP APPVYHPHHH QHHQFHHQQH YY

Arabidopsis Description

FRL4AFRIGIDA-like protein 4a [Source:UniProtKB/Swiss-Prot;Acc:Q9LUV4]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.