CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71688
CDY05835
CDY24170
CDY24202
CDY32645
CDY36943
CDY38847
CDY43361
CDY46076
CDY63965

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G16320.1	CDY46076	AT2G23420.1	21798944
AT5G16320.1	CDY63965	AT2G23420.1	21798944
AT5G16320.1	CDY24202	AT3G13222.1	21798944
AT5G16320.1	CDY43361	AT3G13222.1	21798944
AT5G16320.1	CDY24170	AT3G47620.1	21798944
AT5G16320.1	CDY36943	AT3G47620.1	21798944
AT5G16320.1	CDX71688	AT4G00650.1	19429606
AT5G16320.1	CDY05835	AT4G00650.1	19429606
AT5G16320.1	CDY32645	AT4G00650.1	19429606
AT5G16320.1	CDY38847	AT4G00650.1	19429606

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67200	Canola	cytosol, nucleus	36.31	92.86
CDX69452	Canola	cytosol	92.18	73.17
AT5G16320.1	Thale cress	nucleus	69.27	52.77
CDY12290	Canola	cytosol	50.56	40.67
CDY67951	Canola	cytosol	50.84	39.48
VIT_19s0090g01700.t01	Wine grape	cytosol	29.89	27.79
CDY00062	Canola	cytosol, mitochondrion, nucleus, plastid	13.69	23.0
KRH73863	Soybean	nucleus	32.96	22.74
KRG98570	Soybean	cytosol, nucleus, plastid	34.36	22.4
KRH46301	Soybean	cytosol	33.24	21.79
CDY48750	Canola	cytosol	29.05	19.73
CDY05684	Canola	cytosol	28.21	19.54
CDY00066	Canola	cytosol	28.49	19.1
CDY19713	Canola	cytosol	15.92	18.75
CDX99994	Canola	peroxisome	16.76	17.96
CDY46317	Canola	cytosol, nucleus, plastid	25.42	17.33
CDY34252	Canola	cytosol, nucleus, plastid	25.14	17.24
CDY05835	Canola	cytosol, nucleus, plastid	15.92	15.88
CDY38318	Canola	nucleus	22.35	15.07
CDX71688	Canola	nucleus	22.07	13.5
CDY32645	Canola	nucleus	20.95	12.86
CDY38847	Canola	nucleus, plastid	19.55	11.74
CDX86173	Canola	cytosol	22.63	9.38
CDX80668	Canola	cytosol, mitochondrion, plasma membrane	22.63	9.08
CDX99996	Canola	extracellular	3.35	7.45
CDX86307	Canola	nucleus	28.49	6.83
CDX85335	Canola	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	27.93	6.18
PGSC0003DMT400036725	Potato	nucleus	3.07	4.04
CDY19712	Canola	cytosol, nucleus, peroxisome	3.63	2.71
CDX99995	Canola	cytosol, nucleus, peroxisome	3.63	2.71

Protein Annotations

EnsemblPlants:CDY55572	EnsemblPlantsGene:GSBRNA2T00017036001	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150	GO:GO:0009791
GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	InterPro:Frigida	ncoils:Coil	PANTHER:PTHR31791
PANTHER:PTHR31791:SF13	PFAM:PF07899	ProteinID:CDY55572	ProteinID:CDY55572.1	SEG:seg	UniParc:UPI0004EECC0D
UniProt:A0A078J107	MapMan:35.1	:	:	:	:

Description

BnaC09g41500DFRIGIDA-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078J107]

Coordinates

chrLK033413:+:33411..34916

Molecular Weight (calculated)

40197.2 Da

IEP (calculated)

9.295

GRAVY (calculated)

-0.486

Length

358 amino acids

Sequence
(BLAST)

001: MTETEQIAAA INQIEEKKQN LKKAFDDLQS HRSLLSPSFS LSCKFLADHW DDDAMPNQEL SAAFRYSPDP ASMVLNAIDG GSSKGKSVDV RRVFVLLMEA
101: LIEINDDVKI GVDTKDKAKK VANDWKTKIG NKPFEALLFL HLVAAFKLGS EFNSEELSRY VAMIAKYKQA TLLCNKIGLD KERVGEIITK LLSIGKPILA
201: VRFMYECGRT DGFEPVSVLK GYVKESREAA ERVCKEDKYS LKSQNVATDK EVSALKAVIK IIKDRNLEAE FSEERVEERV EELERQKAQR KRNVEPPQLK
301: PKGRKRPRDR SARGGIVGPY TNPLAAGLYN SAAPPQAVYY GQQAGFVMPP FHPSYYSQ

Best Arabidopsis Sequence Match ( AT5G16320.1 )
(BLAST)

001: MTASETIATA INQIDEKKEK LKKAFDDLQA HRSLLSPSFS LSWSEIDSHF SSLQSSLASR FRLLHSTSPL EHDSYRIDAS DAGKSSSSEE VSEQPVVEPE
101: LRALCEKIDG IGLIKYLIRI WDDETPLNQE VSAAIRYSPD TASMVLDAIE GSNYTPSSSG RSFDVRRVFV LLMEVLIEIN ANITVDTRNR AKKLAYHWKS
201: KVGVKPFEAL VFLHLVAAFE LGSEFDTEEL SDYVFMIAKY KQATLVCNKI GVDRKRVGKL IKTLLDSGKP ILAVKFMYEC GMTDEFEPIP VLKSYIKDCR
301: EAALRVCVED NYSLKSQNEA SDKEVSALKP LIKIIKDQNL ESEFTQEKVE ERVEELEKNK ALRKRNTTNP PKQEPQQKGK KRTRDCKNGS QVPVPSQQLL
401: SRPEALLMPE HSHHGLQLNP YGLMTSAFSG VVVNPLTGLF GSGATPQSLY YAQQTGYVLP PQYHPPYYSQ

Arabidopsis Description

FRL1FRIGIDA-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFF1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.