Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- peroxisome 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY19712 | Canola | cytosol, nucleus, peroxisome | 95.62 | 95.62 |
| CDX80668 | Canola | cytosol, mitochondrion, plasma membrane | 60.96 | 32.74 |
| CDX86173 | Canola | cytosol | 57.41 | 31.83 |
| CDX69452 | Canola | cytosol | 6.05 | 6.43 |
| CDY12290 | Canola | cytosol | 5.43 | 5.84 |
| CDY67951 | Canola | cytosol | 5.43 | 5.64 |
| CDY05835 | Canola | cytosol, nucleus, plastid | 4.18 | 5.57 |
| CDY48750 | Canola | cytosol | 6.05 | 5.5 |
| CDY00066 | Canola | cytosol | 6.05 | 5.43 |
| CDY05684 | Canola | cytosol | 5.85 | 5.42 |
| CDY46317 | Canola | cytosol, nucleus, plastid | 5.22 | 4.76 |
| CDY34252 | Canola | cytosol, nucleus, plastid | 5.01 | 4.6 |
| GSMUA_Achr6P24860_001 | Banana | nucleus | 3.97 | 3.92 |
| Os03t0193225-01 | Rice | plasma membrane | 3.97 | 3.7 |
| CDY55572 | Canola | nucleus | 2.71 | 3.63 |
| CDX71688 | Canola | nucleus | 4.18 | 3.42 |
| CDX99996 | Canola | extracellular | 1.04 | 3.11 |
| CDY38318 | Canola | nucleus | 3.34 | 3.01 |
| Zm00001d028173_P002 | Maize | plastid | 3.13 | 2.93 |
| EER92706 | Sorghum | plastid | 3.13 | 2.92 |
| TraesCS4D01G265900.1 | Wheat | nucleus | 2.71 | 2.61 |
| CDY32645 | Canola | nucleus | 3.13 | 2.57 |
| TraesCS4A01G039500.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 2.71 | 2.54 |
| HORVU4Hr1G071420.1 | Barley | cytosol, plastid | 2.51 | 2.41 |
| TraesCS4B01G266000.1 | Wheat | cytosol, nucleus, plasma membrane | 2.51 | 2.41 |
| CDY38847 | Canola | nucleus, plastid | 2.92 | 2.35 |
| CDX86307 | Canola | nucleus | 6.68 | 2.14 |
| CDX85335 | Canola | cytosol, endoplasmic reticulum, mitochondrion, plasma membrane | 6.68 | 1.98 |
| CDY67200 | Canola | cytosol, nucleus | 0.42 | 1.43 |
| CDY19713 | Canola | cytosol | 0.84 | 1.32 |
| CDX99994 | Canola | peroxisome | 0.84 | 1.2 |
| GSMUA_Achr9P09220_001 | Banana | nucleus | 0.42 | 0.51 |
| CDY00062 | Canola | cytosol, mitochondrion, nucleus, plastid | 0.21 | 0.47 |
| VIT_14s0030g00690.t01 | Wine grape | extracellular, golgi | 0.21 | 0.23 |
Protein Annotations
| EnsemblPlants:CDX99995 | EnsemblPlantsGene:GSBRNA2T00109467001 | InterPro:Frigida | ncoils:Coil | PANTHER:PTHR31791 | PANTHER:PTHR31791:SF16 |
| PFAM:PF07899 | ProteinID:CDX99995 | ProteinID:CDX99995.1 | SEG:seg | UniParc:UPI0004EEF043 | MapMan:35.1 |
Description
BnaC09g03060D
Coordinates
chrLK031916:-:153881..155532
Molecular Weight (calculated)
54199.2 Da
IEP (calculated)
6.579
GRAVY (calculated)
-0.393
Length
479 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDLMEKARS SLGLVDLSKH NFHRTLDSLQ ESAHSLLLLS FQWKEIEGHF DSTKSLLEGR AKELQAREES LNGRAMELES KEKELSSVHD SFEAKVDEFE
101: KMEVRFHSEC KEALETRKAE FEGFTKRIES MEKELEQQRD LRHEFEPLVS LLGKDTGCSS VAMSTNDLVK RNQALARLIP CLDPAKIVLD AIQASLKDFN
201: DSVVVKSCIV LLEKLIEMNL PITWEVDQEA TQLGINWISM AKSNTNNESL VLCCLLFLAA YGLASVTTRE VLLNLLERFL LYDQAPRLFR LLELEHSVYG
301: VVETLKNKEE YLAVLRFICE FRLYKLCPRG RPGALLHEYL ISSDRAARVP FGTVNLMEAQ KARREKIKAD ATMALECIQE RKAEHMFPPK ILNKLSLLKN
401: GESAAKRAME PVHKSLEGRQ NTTNAHEAKR QRLTEPITPS GDKIGESGDA NQTHPLSTEA KPNNLCGSIS ITRKETSRA
101: KMEVRFHSEC KEALETRKAE FEGFTKRIES MEKELEQQRD LRHEFEPLVS LLGKDTGCSS VAMSTNDLVK RNQALARLIP CLDPAKIVLD AIQASLKDFN
201: DSVVVKSCIV LLEKLIEMNL PITWEVDQEA TQLGINWISM AKSNTNNESL VLCCLLFLAA YGLASVTTRE VLLNLLERFL LYDQAPRLFR LLELEHSVYG
301: VVETLKNKEE YLAVLRFICE FRLYKLCPRG RPGALLHEYL ISSDRAARVP FGTVNLMEAQ KARREKIKAD ATMALECIQE RKAEHMFPPK ILNKLSLLKN
401: GESAAKRAME PVHKSLEGRQ NTTNAHEAKR QRLTEPITPS GDKIGESGDA NQTHPLSTEA KPNNLCGSIS ITRKETSRA
001: MEKVTSGLEL VDISKRNFRK TLESLQEGAH SLLLLTIQWK EIESYFDSTR SVLEERAKEL EALEESIKVK ALELEKKEKE LCLIDESMKA KQSEFEKKEK
101: DFDLEQKAEV EKRKREVEQL EKFTTRMESV ERVSDEKLME LGLRATELEL KMEEVEKHRE RIVAGDKLRG EFEPLVSLLA KNMGLSVTMP VKCSTLYLNE
201: NADEMVKKNT ALARMVPYLD PAKVVLDAIE GSFKEYWKKD LGEADDRVVN SWIVLLENLI KMNLKITPQV KQEATPLGIA WLGKAKANMK NDPPQVFGCA
301: LFLAAYGLGS LTTHGVLLTL VERFLLYDHA PKLFRLLGLE EKVSGAVETL KKKEEYLATL KFICEFRLYK LCPGGRPGEL LIEFFDSSDK AARVIAGTGT
401: SMEAQKARRE KKKADAAMAI KYIKEAKAET MFPAKILKRL AVVKNDESAQ RAMEPVQKSY EKRQSTTKGV EKSEAKSSIP YEQKHVIKRP RLTEPTAPSQ
501: NLTVKQPEVV CVPTGKQVKE SGADHQPDTI ATHPSGTETK LNILSGSIKA DMLRELVEKQ PLKESEDLSN ALKCTPDPAK LFLDTSMALC PTNTEGGYEF
601: KMLITSASCS LLLNQLKKLL PKIGHPVKGD AKKLAVYWKD KIAKSKRDQL EVICFLQFLG IFGIVSEFKA DDLLGLLDNS YWQTVSPDLC QFLGLDDAIP
701: GFIQNLIKTG HRIKAIDYIY SFGMVHRFQP VSAIINDSLR ITKESAEKSY REAKNESTTQ VAAIDRQVRA LRAAIKCISC HKLESEFQLG DLEEQIKSLL
801: KLRRNTSNGS GSGSASSKPD STIKQSQTAK PPTVAEVAPV TSNIPLEPST EAASSSASKP FSKKNKRGKK RSMSGNNQSS GHIASHTSNH YPSHDYSLNQ
901: RLTWPVDNYD RGFTGFPNPD YNNNQWGQPE GPQFYHLYQP LDPRYRNY
101: DFDLEQKAEV EKRKREVEQL EKFTTRMESV ERVSDEKLME LGLRATELEL KMEEVEKHRE RIVAGDKLRG EFEPLVSLLA KNMGLSVTMP VKCSTLYLNE
201: NADEMVKKNT ALARMVPYLD PAKVVLDAIE GSFKEYWKKD LGEADDRVVN SWIVLLENLI KMNLKITPQV KQEATPLGIA WLGKAKANMK NDPPQVFGCA
301: LFLAAYGLGS LTTHGVLLTL VERFLLYDHA PKLFRLLGLE EKVSGAVETL KKKEEYLATL KFICEFRLYK LCPGGRPGEL LIEFFDSSDK AARVIAGTGT
401: SMEAQKARRE KKKADAAMAI KYIKEAKAET MFPAKILKRL AVVKNDESAQ RAMEPVQKSY EKRQSTTKGV EKSEAKSSIP YEQKHVIKRP RLTEPTAPSQ
501: NLTVKQPEVV CVPTGKQVKE SGADHQPDTI ATHPSGTETK LNILSGSIKA DMLRELVEKQ PLKESEDLSN ALKCTPDPAK LFLDTSMALC PTNTEGGYEF
601: KMLITSASCS LLLNQLKKLL PKIGHPVKGD AKKLAVYWKD KIAKSKRDQL EVICFLQFLG IFGIVSEFKA DDLLGLLDNS YWQTVSPDLC QFLGLDDAIP
701: GFIQNLIKTG HRIKAIDYIY SFGMVHRFQP VSAIINDSLR ITKESAEKSY REAKNESTTQ VAAIDRQVRA LRAAIKCISC HKLESEFQLG DLEEQIKSLL
801: KLRRNTSNGS GSGSASSKPD STIKQSQTAK PPTVAEVAPV TSNIPLEPST EAASSSASKP FSKKNKRGKK RSMSGNNQSS GHIASHTSNH YPSHDYSLNQ
901: RLTWPVDNYD RGFTGFPNPD YNNNQWGQPE GPQFYHLYQP LDPRYRNY
Arabidopsis Description
FRL5FRIGIDA-like protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q5XV31]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.