Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009973.1-P | Field mustard | cytosol | 96.99 | 96.43 |
| CDX80668 | Canola | cytosol, mitochondrion, plasma membrane | 90.97 | 88.12 |
| CDX99994 | Canola | peroxisome | 24.07 | 62.28 |
| CDY19713 | Canola | cytosol | 21.3 | 60.53 |
| CDX99995 | Canola | cytosol, nucleus, peroxisome | 31.83 | 57.41 |
| CDY19712 | Canola | cytosol, nucleus, peroxisome | 31.6 | 56.99 |
| AT5G27230.1 | Thale cress | nucleus | 61.92 | 56.43 |
| CDX99996 | Canola | extracellular | 8.68 | 46.58 |
| CDY55572 | Canola | nucleus | 9.38 | 22.63 |
| CDY67951 | Canola | cytosol | 11.69 | 21.91 |
| CDY12290 | Canola | cytosol | 11.23 | 21.8 |
| CDX69452 | Canola | cytosol | 10.88 | 20.84 |
| CDY48750 | Canola | cytosol | 12.62 | 20.68 |
| CDY05684 | Canola | cytosol | 12.15 | 20.31 |
| CDY00066 | Canola | cytosol | 12.5 | 20.22 |
| GSMUA_Achr9P09220_001 | Banana | nucleus | 9.26 | 20.2 |
| TraesCS4D01G265900.1 | Wheat | nucleus | 10.88 | 18.88 |
| TraesCS4B01G266000.1 | Wheat | cytosol, nucleus, plasma membrane | 10.76 | 18.67 |
| TraesCS4A01G039500.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 11.0 | 18.55 |
| CDY46317 | Canola | cytosol, nucleus, plastid | 11.23 | 18.48 |
| CDY34252 | Canola | cytosol, nucleus, plastid | 11.0 | 18.2 |
| GSMUA_Achr6P24860_001 | Banana | nucleus | 10.07 | 17.94 |
| CDY05835 | Canola | cytosol, nucleus, plastid | 7.29 | 17.55 |
| Os03t0193225-01 | Rice | plasma membrane | 10.42 | 17.51 |
| HORVU4Hr1G071420.1 | Barley | cytosol, plastid | 9.95 | 17.3 |
| CDY00062 | Canola | cytosol, mitochondrion, nucleus, plastid | 4.05 | 16.43 |
| EER92706 | Sorghum | plastid | 9.72 | 16.37 |
| Zm00001d028173_P002 | Maize | plastid | 9.49 | 16.02 |
| CDY32645 | Canola | nucleus | 10.76 | 15.95 |
| VIT_14s0030g00690.t01 | Wine grape | extracellular, golgi | 7.99 | 15.79 |
| CDY38847 | Canola | nucleus, plastid | 10.53 | 15.27 |
| CDY38318 | Canola | nucleus | 9.38 | 15.25 |
| CDY67200 | Canola | cytosol, nucleus | 2.43 | 15.0 |
| CDX71688 | Canola | nucleus | 9.61 | 14.19 |
| CDX86307 | Canola | nucleus | 12.04 | 6.97 |
| CDX85335 | Canola | cytosol, endoplasmic reticulum, mitochondrion, plasma membrane | 12.27 | 6.56 |
Protein Annotations
| EnsemblPlants:CDX86173 | EnsemblPlantsGene:GSBRNA2T00144238001 | InterPro:Frigida | ncoils:Coil | PANTHER:PTHR31791 | PANTHER:PTHR31791:SF16 |
| PFAM:PF07899 | ProteinID:CDX86173 | ProteinID:CDX86173.1 | SEG:seg | UniParc:UPI0004EDD2DB | MapMan:35.1 |
Description
BnaA06g28900D
Coordinates
chrLK031845:-:171259..174412
Molecular Weight (calculated)
95882.0 Da
IEP (calculated)
7.542
GRAVY (calculated)
-0.403
Length
864 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSLIEKAMS ELRLVDLSKR NFKQTLDSLQ ENAHSLILLS IQWKEIEALC DSSKALLEER AKELEAMDAS LKVRALELEA KASDLEKKEE ALGLEEVEKR
101: KEDDKVKELE EKAKELELKV KELQQKQRGG VTTVRSEFEP LVSLLAKNIG TNVSMPTNSS TFRLSGDDLV KRNQGLARTI PCLDPAKLVL DAVEGCFKED
201: FGGGGGDRRG SVVDSCILLL EKLMEMKVCV TREVKQEATQ LGIDWINKAI ITGPKNDSLV LGCLVFLAAY GLDFVTTPEV LLHLSESFLL YEQAPRLFRR
301: LGLEDHVSDV VETLKMKDEY VATLRFICEF RLSKLCPGWR PRTVLHEFLQ SLTRVARVTD GTGNFSEVEK AKREKRKADA AMALDCIREK KAESLFNANA
401: LKELSLLAKK DSAPRAMEPV QGSCGNGQNT ANAVEKSNAV SVIPDEQKNE TKRQRLTEPI TPCQNSTVNQ LKVVPPSSGE KAVELVVNHP QPDAKATNPL
501: STEAELNILS CSTNADTLRK LLEKQPPVES DISNAIKCSP DPAKLVLETS MALCPKTPEG GYDFKLLVTS DRCLLLLDQL KKLPLQIEHP VKDEAKKLAV
601: HWKDEISKSK TDELEAVCFL KFVGIFGIVS EFKANDLLAL LDSSYWQTVS PDLCQFLGLD SAIPGFIQNL IKTGYRLKAV DYIYSLGMVH RFQPVSAIIN
701: DSMRITKESA EKSYRDANNE PAPQVAAVER QIKTLRAAIK CISCHKLESE FQLGDLEAQI KSLLKRRRNL LAGPNSTVKQ SQPNSAEVGS VTSNTPLEPS
801: TTAASSSVTR PGSTSNERGQ KRGFSENKQS SGRVTSTPRN NFQGNEGQSY RVDHHQSKRF HRNF
101: KEDDKVKELE EKAKELELKV KELQQKQRGG VTTVRSEFEP LVSLLAKNIG TNVSMPTNSS TFRLSGDDLV KRNQGLARTI PCLDPAKLVL DAVEGCFKED
201: FGGGGGDRRG SVVDSCILLL EKLMEMKVCV TREVKQEATQ LGIDWINKAI ITGPKNDSLV LGCLVFLAAY GLDFVTTPEV LLHLSESFLL YEQAPRLFRR
301: LGLEDHVSDV VETLKMKDEY VATLRFICEF RLSKLCPGWR PRTVLHEFLQ SLTRVARVTD GTGNFSEVEK AKREKRKADA AMALDCIREK KAESLFNANA
401: LKELSLLAKK DSAPRAMEPV QGSCGNGQNT ANAVEKSNAV SVIPDEQKNE TKRQRLTEPI TPCQNSTVNQ LKVVPPSSGE KAVELVVNHP QPDAKATNPL
501: STEAELNILS CSTNADTLRK LLEKQPPVES DISNAIKCSP DPAKLVLETS MALCPKTPEG GYDFKLLVTS DRCLLLLDQL KKLPLQIEHP VKDEAKKLAV
601: HWKDEISKSK TDELEAVCFL KFVGIFGIVS EFKANDLLAL LDSSYWQTVS PDLCQFLGLD SAIPGFIQNL IKTGYRLKAV DYIYSLGMVH RFQPVSAIIN
701: DSMRITKESA EKSYRDANNE PAPQVAAVER QIKTLRAAIK CISCHKLESE FQLGDLEAQI KSLLKRRRNL LAGPNSTVKQ SQPNSAEVGS VTSNTPLEPS
801: TTAASSSVTR PGSTSNERGQ KRGFSENKQS SGRVTSTPRN NFQGNEGQSY RVDHHQSKRF HRNF
001: MEKVTSGLEL VDISKRNFRK TLESLQEGAH SLLLLTIQWK EIESYFDSTR SVLEERAKEL EALEESIKVK ALELEKKEKE LCLIDESMKA KQSEFEKKEK
101: DFDLEQKAEV EKRKREVEQL EKFTTRMESV ERVSDEKLME LGLRATELEL KMEEVEKHRE RIVAGDKLRG EFEPLVSLLA KNMGLSVTMP VKCSTLYLNE
201: NADEMVKKNT ALARMVPYLD PAKVVLDAIE GSFKEYWKKD LGEADDRVVN SWIVLLENLI KMNLKITPQV KQEATPLGIA WLGKAKANMK NDPPQVFGCA
301: LFLAAYGLGS LTTHGVLLTL VERFLLYDHA PKLFRLLGLE EKVSGAVETL KKKEEYLATL KFICEFRLYK LCPGGRPGEL LIEFFDSSDK AARVIAGTGT
401: SMEAQKARRE KKKADAAMAI KYIKEAKAET MFPAKILKRL AVVKNDESAQ RAMEPVQKSY EKRQSTTKGV EKSEAKSSIP YEQKHVIKRP RLTEPTAPSQ
501: NLTVKQPEVV CVPTGKQVKE SGADHQPDTI ATHPSGTETK LNILSGSIKA DMLRELVEKQ PLKESEDLSN ALKCTPDPAK LFLDTSMALC PTNTEGGYEF
601: KMLITSASCS LLLNQLKKLL PKIGHPVKGD AKKLAVYWKD KIAKSKRDQL EVICFLQFLG IFGIVSEFKA DDLLGLLDNS YWQTVSPDLC QFLGLDDAIP
701: GFIQNLIKTG HRIKAIDYIY SFGMVHRFQP VSAIINDSLR ITKESAEKSY REAKNESTTQ VAAIDRQVRA LRAAIKCISC HKLESEFQLG DLEEQIKSLL
801: KLRRNTSNGS GSGSASSKPD STIKQSQTAK PPTVAEVAPV TSNIPLEPST EAASSSASKP FSKKNKRGKK RSMSGNNQSS GHIASHTSNH YPSHDYSLNQ
901: RLTWPVDNYD RGFTGFPNPD YNNNQWGQPE GPQFYHLYQP LDPRYRNY
101: DFDLEQKAEV EKRKREVEQL EKFTTRMESV ERVSDEKLME LGLRATELEL KMEEVEKHRE RIVAGDKLRG EFEPLVSLLA KNMGLSVTMP VKCSTLYLNE
201: NADEMVKKNT ALARMVPYLD PAKVVLDAIE GSFKEYWKKD LGEADDRVVN SWIVLLENLI KMNLKITPQV KQEATPLGIA WLGKAKANMK NDPPQVFGCA
301: LFLAAYGLGS LTTHGVLLTL VERFLLYDHA PKLFRLLGLE EKVSGAVETL KKKEEYLATL KFICEFRLYK LCPGGRPGEL LIEFFDSSDK AARVIAGTGT
401: SMEAQKARRE KKKADAAMAI KYIKEAKAET MFPAKILKRL AVVKNDESAQ RAMEPVQKSY EKRQSTTKGV EKSEAKSSIP YEQKHVIKRP RLTEPTAPSQ
501: NLTVKQPEVV CVPTGKQVKE SGADHQPDTI ATHPSGTETK LNILSGSIKA DMLRELVEKQ PLKESEDLSN ALKCTPDPAK LFLDTSMALC PTNTEGGYEF
601: KMLITSASCS LLLNQLKKLL PKIGHPVKGD AKKLAVYWKD KIAKSKRDQL EVICFLQFLG IFGIVSEFKA DDLLGLLDNS YWQTVSPDLC QFLGLDDAIP
701: GFIQNLIKTG HRIKAIDYIY SFGMVHRFQP VSAIINDSLR ITKESAEKSY REAKNESTTQ VAAIDRQVRA LRAAIKCISC HKLESEFQLG DLEEQIKSLL
801: KLRRNTSNGS GSGSASSKPD STIKQSQTAK PPTVAEVAPV TSNIPLEPST EAASSSASKP FSKKNKRGKK RSMSGNNQSS GHIASHTSNH YPSHDYSLNQ
901: RLTWPVDNYD RGFTGFPNPD YNNNQWGQPE GPQFYHLYQP LDPRYRNY
Arabidopsis Description
FRL5FRIGIDA-like protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q5XV31]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.