Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P09220_001 | Banana | nucleus | 41.24 | 50.51 |
| GSMUA_Achr2P05710_001 | Banana | nucleus | 12.58 | 31.44 |
| KRH73863 | Soybean | nucleus | 31.13 | 29.09 |
| GSMUA_Achr8P29000_001 | Banana | nucleus | 30.1 | 27.04 |
| KRG98570 | Soybean | cytosol, nucleus, plastid | 30.52 | 26.96 |
| GSMUA_Achr9P08130_001 | Banana | cytosol | 29.9 | 26.85 |
| KRH46301 | Soybean | cytosol | 30.1 | 26.74 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus | 11.96 | 24.79 |
| EER92706 | Sorghum | plastid | 25.98 | 24.56 |
| GSMUA_Achr3P16830_001 | Banana | endoplasmic reticulum, golgi | 29.48 | 24.32 |
| HORVU4Hr1G071420.1 | Barley | cytosol, plastid | 24.74 | 24.14 |
| TraesCS4B01G266000.1 | Wheat | cytosol, nucleus, plasma membrane | 24.74 | 24.1 |
| TraesCS4D01G265900.1 | Wheat | nucleus | 24.54 | 23.9 |
| Zm00001d028173_P002 | Maize | plastid | 25.15 | 23.83 |
| GSMUA_Achr2P12700_001 | Banana | nucleus | 23.92 | 23.72 |
| GSMUA_Achr7P01520_001 | Banana | nucleus | 22.89 | 22.75 |
| GSMUA_Achr5P16090_001 | Banana | nucleus | 28.45 | 22.7 |
| Os03t0193225-01 | Rice | plasma membrane | 23.92 | 22.57 |
| TraesCS4A01G039500.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 23.3 | 22.07 |
| CDY19713 | Canola | cytosol | 13.61 | 21.71 |
| GSMUA_Achr10P... | Banana | nucleus | 22.89 | 21.39 |
| CDX99994 | Canola | peroxisome | 13.81 | 20.06 |
| GSMUA_Achr4P28440_001 | Banana | cytosol | 12.58 | 19.87 |
| VIT_14s0030g00690.t01 | Wine grape | extracellular, golgi | 16.7 | 18.54 |
| Bra036105.1-P | Field mustard | nucleus | 19.38 | 11.27 |
| CDX99996 | Canola | extracellular | 3.71 | 11.18 |
| AT5G27230.1 | Thale cress | nucleus | 20.62 | 10.55 |
| CDX86173 | Canola | cytosol | 17.94 | 10.07 |
| Bra009973.1-P | Field mustard | cytosol | 17.94 | 10.01 |
| CDX80668 | Canola | cytosol, mitochondrion, plasma membrane | 17.11 | 9.3 |
| PGSC0003DMT400036725 | Potato | nucleus | 4.54 | 8.09 |
| CDY19712 | Canola | cytosol, nucleus, peroxisome | 4.12 | 4.18 |
| CDX99995 | Canola | cytosol, nucleus, peroxisome | 3.92 | 3.97 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P24860_001 | EnsemblPlants:GSMUA_Achr6T24860_001 | EnsemblPlantsGene:GSMUA_Achr6G24860_001 | GO:GO:0000003 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0030154 | InterPro:Frigida | ncoils:Coil |
| PANTHER:PTHR31791 | PFAM:PF07899 | SEG:seg | UniParc:UPI000295AC1E | UniProt:M0T9Y2 | MapMan:35.1 |
Description
frigida, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G24860_001]
Coordinates
chr6:-:25691871..25695120
Molecular Weight (calculated)
53743.1 Da
IEP (calculated)
9.383
GRAVY (calculated)
-0.457
Length
485 amino acids
Sequence
(BLAST)
(BLAST)
001: MASIPSKKEE LRKAFEALQA FSSCLASFTL KWKDLEDHLA SIESLIGDRL RELDSKSHSS VKAEANPETA PEVVPRRQLS SLCVNMDGVG LRSYIIVNRN
101: DIAEIRKELG AAIRFAPDPA KLVLDAMDGF HRPRAEGEKD GDVQVIKRTC LSLLEQVQIL APEIKSSVKD QAKKVAVEWK GQILDDSDKG MDAFAFLQLL
201: ATYRLASEFN TDEILDLFVL ISRRKQALEL CKRLGLVQNM SDLIQKLNSK SRQLEAIKFV HALDLFDKYP PVPLLEAYLR ESRKAAQGAR KRGNNSSQLQ
301: NEAISKELAA AKAVIKTVEE CKLESEFSCE DLQKRITRLE QQKADKKRTA TAATATNSRT SKQQQPSNKR PRSSTTLSYP VRSHPLPSCA QNQSHLGLTE
401: QQSSYAGLGR SYGLTTTAAL YDVALPSIPG TIELSGKPSP RSYLYPSEFH ASSSLYNRPA SYGGYPMSGL GTSYGSSFYP LGYQK
101: DIAEIRKELG AAIRFAPDPA KLVLDAMDGF HRPRAEGEKD GDVQVIKRTC LSLLEQVQIL APEIKSSVKD QAKKVAVEWK GQILDDSDKG MDAFAFLQLL
201: ATYRLASEFN TDEILDLFVL ISRRKQALEL CKRLGLVQNM SDLIQKLNSK SRQLEAIKFV HALDLFDKYP PVPLLEAYLR ESRKAAQGAR KRGNNSSQLQ
301: NEAISKELAA AKAVIKTVEE CKLESEFSCE DLQKRITRLE QQKADKKRTA TAATATNSRT SKQQQPSNKR PRSSTTLSYP VRSHPLPSCA QNQSHLGLTE
401: QQSSYAGLGR SYGLTTTAAL YDVALPSIPG TIELSGKPSP RSYLYPSEFH ASSSLYNRPA SYGGYPMSGL GTSYGSSFYP LGYQK
001: MTAAESIAAS INQIDEKKQK LKKAFDDLQA HRSLLSPSFN LSWSEIDSHF SSLQSSLFNR LQSAVTSSNS GNIETPTAVT TETPVLWPEL RKFCEKNDGK
101: GLGNYMIENS RKRLSINEEL PNAIRCSENP APLVLDAIEG SYHCSSPSSS SSARAIDVKR IFVLLLEALI EINANLTNDL RERARTIAYD WKPNIGNKPS
201: EALGFLHLVA AFELGSLFST EEICDYIFLI SKYKQATTIC KKIGLDRNRI GVLVQKFLDT GRLLVAIRFI YENEMVGEFE PVSILKTSLK NSREAAKRVC
301: AEGNYSLKVQ NEATDKELSA LRAVIKVVKE KNIESEFMEE KLEECVKELE DQKAQRKRAT KFNSPANPQQ PQEQKVDNKR PRVANGSSME YNLTIPPLRP
401: QQQPPLLPTP SQILQVNPYG LLSSILPGVA VPYGNPRALF GSVPAPASRP VFYVQQTGYG MPPPQYRPPY YPQ
101: GLGNYMIENS RKRLSINEEL PNAIRCSENP APLVLDAIEG SYHCSSPSSS SSARAIDVKR IFVLLLEALI EINANLTNDL RERARTIAYD WKPNIGNKPS
201: EALGFLHLVA AFELGSLFST EEICDYIFLI SKYKQATTIC KKIGLDRNRI GVLVQKFLDT GRLLVAIRFI YENEMVGEFE PVSILKTSLK NSREAAKRVC
301: AEGNYSLKVQ NEATDKELSA LRAVIKVVKE KNIESEFMEE KLEECVKELE DQKAQRKRAT KFNSPANPQQ PQEQKVDNKR PRVANGSSME YNLTIPPLRP
401: QQQPPLLPTP SQILQVNPYG LLSSILPGVA VPYGNPRALF GSVPAPASRP VFYVQQTGYG MPPPQYRPPY YPQ
Arabidopsis Description
FRL2Inactive FRIGIDA-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6S2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.