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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • mitochondrion 1
  • plasma membrane 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX86173 Canola cytosol 96.43 96.99
Bra036105.1-P Field mustard nucleus 56.27 58.63
AT5G27230.1 Thale cress nucleus 62.14 56.96
Bra023207.1-P Field mustard cytosol 11.51 21.69
Bra020704.1-P Field mustard cytosol 12.43 20.81
Bra008624.1-P Field mustard cytosol 10.59 20.4
GSMUA_Achr9P09220_001 Banana nucleus 9.21 20.2
Bra036176.1-P Field mustard cytosol 11.74 19.62
Bra037489.1-P Field mustard cytosol 12.08 19.2
TraesCS4B01G266000.1 Wheat cytosol, nucleus, plasma membrane 10.93 19.08
TraesCS4D01G265900.1 Wheat nucleus 10.93 19.08
TraesCS4A01G039500.1 Wheat cytosol, nucleus, plasma membrane, plastid 11.05 18.75
GSMUA_Achr6P24860_001 Banana nucleus 10.01 17.94
HORVU4Hr1G071420.1 Barley cytosol, plastid 10.24 17.91
Bra023825.1-P Field mustard cytosol, nucleus, plastid 10.93 17.79
Os03t0193225-01 Rice plasma membrane 10.47 17.7
Bra035723.1-P Field mustard plastid 7.13 16.94
EER92706 Sorghum plastid 9.67 16.37
Zm00001d028173_P002 Maize plastid 9.44 16.02
VIT_14s0030g00690.t01 Wine grape extracellular, golgi 7.94 15.79
Bra029192.1-P Field mustard nucleus, plastid 10.59 15.67
Bra037488.1-P Field mustard cytosol 0.0 0.0
Protein Annotations
EnsemblPlants:Bra009973.1EnsemblPlants:Bra009973.1-PEnsemblPlantsGene:Bra009973GO:GO:0000003GO:GO:0007275GO:GO:0008150
GO:GO:0009791GO:GO:0009908GO:GO:0009987GO:GO:0030154InterPro:Frigidancoils:Coil
PANTHER:PTHR31791PANTHER:PTHR31791:SF16PFAM:PF07899SEG:segUniParc:UPI000253F517UniProt:M4D0H5
MapMan:35.1:::::
Description
AT5G27230 (E=1e-220) | INVOLVED IN: biological_process unknown; EXPRESSED IN: seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT3G22440.1); Has 7968 Blast hits to 5791 proteins in 512 species: Archae - 158; Bacteria - 808; Metazoa - 2750; Fungi - 421; Plants - 1028; Viruses - 76; Other Eukaryotes - 2727 (source: NCBI BLink).
Coordinates
chrA06:-:18400432..18403598
Molecular Weight (calculated)
96405.6 Da
IEP (calculated)
7.417
GRAVY (calculated)
-0.413
Length
869 amino acids
Sequence
(BLAST)
001: MGSLIEKAMS ELRLVDLSKR NFKQTLDSLQ ENAHSLILLS IQWKEIEALC DSSKALLEER AKELEAMDAS LKVRALELEA KASDLEKKEE ALGLEEVEKR
101: KEDDKVKELE EKAKELELKV RELQQKQRGG VTTVRSEFEP LVSLLAKNIG TNVSIMPTNS SAFRLSGDDL VKRNQGLART IPCLDPAKLV LDAVEGCFKE
201: DFGGGGGDRR GSVVDSCILL LEKLMEMKVC VTREVKQEAT QLGIDWINKA IITGPKNDSL VLGCLVFLAA YGLDFVTTPE VLLHLSESFL LYEHAPRLFR
301: RLGLEDHVSD VVETLKMKDE YVATLRFICE FRLSKLCPGW RPRTVLHEFL QSLTRVDRVT DGTGNFLEAE KAKREKRKAD AAMAIDCIRE KKAESLFNAN
401: ALKELSLLAK KDSAPRATEP VRESCGNGQN KANAVEKSNA VSVIPDEQKN ETKRQRLTEP ITPCQNSTVN QLKVVPPSSG EKAVELVVNH PQPDAEATNP
501: LSTETELNIL SCSTNADTLR KLLEKQPPVE SDISNAIKCF PDPAKLVLDT SMALCPKTPE GGYDFKLLVT SDRCLLLLDQ LKKLPLQIEH PVKDEAKKLA
601: VHWKDEISKS KTDELEAVCF LKFVGIFGIV SEFKANDLLA LLDSSYWQTV SPDLCQFLGL DSAIPGFIQN LIKTGYRLKA VDYIYSLGMV HRFQPVSAII
701: NDSMRITKES AEKSYRDANN EPAPQVAAVE RQIKTLRAAI KCISCHKLES EFQLGDLEAQ IKSLLKRRRN LLNGPGSGSN PNSTVKQSQP NSAGVGSVTG
801: NIPSEPAASS SVTKPGSTSN EKRGQKRGFS ENKQSSGRVT STPRNNFHGN EGQSYPVDHH QSKRFHRNF
Best Arabidopsis Sequence Match ( AT5G27230.1 )
(BLAST)
001: MEKVTSGLEL VDISKRNFRK TLESLQEGAH SLLLLTIQWK EIESYFDSTR SVLEERAKEL EALEESIKVK ALELEKKEKE LCLIDESMKA KQSEFEKKEK
101: DFDLEQKAEV EKRKREVEQL EKFTTRMESV ERVSDEKLME LGLRATELEL KMEEVEKHRE RIVAGDKLRG EFEPLVSLLA KNMGLSVTMP VKCSTLYLNE
201: NADEMVKKNT ALARMVPYLD PAKVVLDAIE GSFKEYWKKD LGEADDRVVN SWIVLLENLI KMNLKITPQV KQEATPLGIA WLGKAKANMK NDPPQVFGCA
301: LFLAAYGLGS LTTHGVLLTL VERFLLYDHA PKLFRLLGLE EKVSGAVETL KKKEEYLATL KFICEFRLYK LCPGGRPGEL LIEFFDSSDK AARVIAGTGT
401: SMEAQKARRE KKKADAAMAI KYIKEAKAET MFPAKILKRL AVVKNDESAQ RAMEPVQKSY EKRQSTTKGV EKSEAKSSIP YEQKHVIKRP RLTEPTAPSQ
501: NLTVKQPEVV CVPTGKQVKE SGADHQPDTI ATHPSGTETK LNILSGSIKA DMLRELVEKQ PLKESEDLSN ALKCTPDPAK LFLDTSMALC PTNTEGGYEF
601: KMLITSASCS LLLNQLKKLL PKIGHPVKGD AKKLAVYWKD KIAKSKRDQL EVICFLQFLG IFGIVSEFKA DDLLGLLDNS YWQTVSPDLC QFLGLDDAIP
701: GFIQNLIKTG HRIKAIDYIY SFGMVHRFQP VSAIINDSLR ITKESAEKSY REAKNESTTQ VAAIDRQVRA LRAAIKCISC HKLESEFQLG DLEEQIKSLL
801: KLRRNTSNGS GSGSASSKPD STIKQSQTAK PPTVAEVAPV TSNIPLEPST EAASSSASKP FSKKNKRGKK RSMSGNNQSS GHIASHTSNH YPSHDYSLNQ
901: RLTWPVDNYD RGFTGFPNPD YNNNQWGQPE GPQFYHLYQP LDPRYRNY
Arabidopsis Description
FRL5FRIGIDA-like protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q5XV31]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.