Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plasma membrane 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDX86173 | Canola | cytosol | 96.43 | 96.99 |
Bra036105.1-P | Field mustard | nucleus | 56.27 | 58.63 |
AT5G27230.1 | Thale cress | nucleus | 62.14 | 56.96 |
Bra023207.1-P | Field mustard | cytosol | 11.51 | 21.69 |
Bra020704.1-P | Field mustard | cytosol | 12.43 | 20.81 |
Bra008624.1-P | Field mustard | cytosol | 10.59 | 20.4 |
GSMUA_Achr9P09220_001 | Banana | nucleus | 9.21 | 20.2 |
Bra036176.1-P | Field mustard | cytosol | 11.74 | 19.62 |
Bra037489.1-P | Field mustard | cytosol | 12.08 | 19.2 |
TraesCS4B01G266000.1 | Wheat | cytosol, nucleus, plasma membrane | 10.93 | 19.08 |
TraesCS4D01G265900.1 | Wheat | nucleus | 10.93 | 19.08 |
TraesCS4A01G039500.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 11.05 | 18.75 |
GSMUA_Achr6P24860_001 | Banana | nucleus | 10.01 | 17.94 |
HORVU4Hr1G071420.1 | Barley | cytosol, plastid | 10.24 | 17.91 |
Bra023825.1-P | Field mustard | cytosol, nucleus, plastid | 10.93 | 17.79 |
Os03t0193225-01 | Rice | plasma membrane | 10.47 | 17.7 |
Bra035723.1-P | Field mustard | plastid | 7.13 | 16.94 |
EER92706 | Sorghum | plastid | 9.67 | 16.37 |
Zm00001d028173_P002 | Maize | plastid | 9.44 | 16.02 |
VIT_14s0030g00690.t01 | Wine grape | extracellular, golgi | 7.94 | 15.79 |
Bra029192.1-P | Field mustard | nucleus, plastid | 10.59 | 15.67 |
Bra037488.1-P | Field mustard | cytosol | 0.0 | 0.0 |
Protein Annotations
EnsemblPlants:Bra009973.1 | EnsemblPlants:Bra009973.1-P | EnsemblPlantsGene:Bra009973 | GO:GO:0000003 | GO:GO:0007275 | GO:GO:0008150 |
GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0030154 | InterPro:Frigida | ncoils:Coil |
PANTHER:PTHR31791 | PANTHER:PTHR31791:SF16 | PFAM:PF07899 | SEG:seg | UniParc:UPI000253F517 | UniProt:M4D0H5 |
MapMan:35.1 | : | : | : | : | : |
Description
AT5G27230 (E=1e-220) | INVOLVED IN: biological_process unknown; EXPRESSED IN: seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT3G22440.1); Has 7968 Blast hits to 5791 proteins in 512 species: Archae - 158; Bacteria - 808; Metazoa - 2750; Fungi - 421; Plants - 1028; Viruses - 76; Other Eukaryotes - 2727 (source: NCBI BLink).
Coordinates
chrA06:-:18400432..18403598
Molecular Weight (calculated)
96405.6 Da
IEP (calculated)
7.417
GRAVY (calculated)
-0.413
Length
869 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSLIEKAMS ELRLVDLSKR NFKQTLDSLQ ENAHSLILLS IQWKEIEALC DSSKALLEER AKELEAMDAS LKVRALELEA KASDLEKKEE ALGLEEVEKR
101: KEDDKVKELE EKAKELELKV RELQQKQRGG VTTVRSEFEP LVSLLAKNIG TNVSIMPTNS SAFRLSGDDL VKRNQGLART IPCLDPAKLV LDAVEGCFKE
201: DFGGGGGDRR GSVVDSCILL LEKLMEMKVC VTREVKQEAT QLGIDWINKA IITGPKNDSL VLGCLVFLAA YGLDFVTTPE VLLHLSESFL LYEHAPRLFR
301: RLGLEDHVSD VVETLKMKDE YVATLRFICE FRLSKLCPGW RPRTVLHEFL QSLTRVDRVT DGTGNFLEAE KAKREKRKAD AAMAIDCIRE KKAESLFNAN
401: ALKELSLLAK KDSAPRATEP VRESCGNGQN KANAVEKSNA VSVIPDEQKN ETKRQRLTEP ITPCQNSTVN QLKVVPPSSG EKAVELVVNH PQPDAEATNP
501: LSTETELNIL SCSTNADTLR KLLEKQPPVE SDISNAIKCF PDPAKLVLDT SMALCPKTPE GGYDFKLLVT SDRCLLLLDQ LKKLPLQIEH PVKDEAKKLA
601: VHWKDEISKS KTDELEAVCF LKFVGIFGIV SEFKANDLLA LLDSSYWQTV SPDLCQFLGL DSAIPGFIQN LIKTGYRLKA VDYIYSLGMV HRFQPVSAII
701: NDSMRITKES AEKSYRDANN EPAPQVAAVE RQIKTLRAAI KCISCHKLES EFQLGDLEAQ IKSLLKRRRN LLNGPGSGSN PNSTVKQSQP NSAGVGSVTG
801: NIPSEPAASS SVTKPGSTSN EKRGQKRGFS ENKQSSGRVT STPRNNFHGN EGQSYPVDHH QSKRFHRNF
101: KEDDKVKELE EKAKELELKV RELQQKQRGG VTTVRSEFEP LVSLLAKNIG TNVSIMPTNS SAFRLSGDDL VKRNQGLART IPCLDPAKLV LDAVEGCFKE
201: DFGGGGGDRR GSVVDSCILL LEKLMEMKVC VTREVKQEAT QLGIDWINKA IITGPKNDSL VLGCLVFLAA YGLDFVTTPE VLLHLSESFL LYEHAPRLFR
301: RLGLEDHVSD VVETLKMKDE YVATLRFICE FRLSKLCPGW RPRTVLHEFL QSLTRVDRVT DGTGNFLEAE KAKREKRKAD AAMAIDCIRE KKAESLFNAN
401: ALKELSLLAK KDSAPRATEP VRESCGNGQN KANAVEKSNA VSVIPDEQKN ETKRQRLTEP ITPCQNSTVN QLKVVPPSSG EKAVELVVNH PQPDAEATNP
501: LSTETELNIL SCSTNADTLR KLLEKQPPVE SDISNAIKCF PDPAKLVLDT SMALCPKTPE GGYDFKLLVT SDRCLLLLDQ LKKLPLQIEH PVKDEAKKLA
601: VHWKDEISKS KTDELEAVCF LKFVGIFGIV SEFKANDLLA LLDSSYWQTV SPDLCQFLGL DSAIPGFIQN LIKTGYRLKA VDYIYSLGMV HRFQPVSAII
701: NDSMRITKES AEKSYRDANN EPAPQVAAVE RQIKTLRAAI KCISCHKLES EFQLGDLEAQ IKSLLKRRRN LLNGPGSGSN PNSTVKQSQP NSAGVGSVTG
801: NIPSEPAASS SVTKPGSTSN EKRGQKRGFS ENKQSSGRVT STPRNNFHGN EGQSYPVDHH QSKRFHRNF
001: MEKVTSGLEL VDISKRNFRK TLESLQEGAH SLLLLTIQWK EIESYFDSTR SVLEERAKEL EALEESIKVK ALELEKKEKE LCLIDESMKA KQSEFEKKEK
101: DFDLEQKAEV EKRKREVEQL EKFTTRMESV ERVSDEKLME LGLRATELEL KMEEVEKHRE RIVAGDKLRG EFEPLVSLLA KNMGLSVTMP VKCSTLYLNE
201: NADEMVKKNT ALARMVPYLD PAKVVLDAIE GSFKEYWKKD LGEADDRVVN SWIVLLENLI KMNLKITPQV KQEATPLGIA WLGKAKANMK NDPPQVFGCA
301: LFLAAYGLGS LTTHGVLLTL VERFLLYDHA PKLFRLLGLE EKVSGAVETL KKKEEYLATL KFICEFRLYK LCPGGRPGEL LIEFFDSSDK AARVIAGTGT
401: SMEAQKARRE KKKADAAMAI KYIKEAKAET MFPAKILKRL AVVKNDESAQ RAMEPVQKSY EKRQSTTKGV EKSEAKSSIP YEQKHVIKRP RLTEPTAPSQ
501: NLTVKQPEVV CVPTGKQVKE SGADHQPDTI ATHPSGTETK LNILSGSIKA DMLRELVEKQ PLKESEDLSN ALKCTPDPAK LFLDTSMALC PTNTEGGYEF
601: KMLITSASCS LLLNQLKKLL PKIGHPVKGD AKKLAVYWKD KIAKSKRDQL EVICFLQFLG IFGIVSEFKA DDLLGLLDNS YWQTVSPDLC QFLGLDDAIP
701: GFIQNLIKTG HRIKAIDYIY SFGMVHRFQP VSAIINDSLR ITKESAEKSY REAKNESTTQ VAAIDRQVRA LRAAIKCISC HKLESEFQLG DLEEQIKSLL
801: KLRRNTSNGS GSGSASSKPD STIKQSQTAK PPTVAEVAPV TSNIPLEPST EAASSSASKP FSKKNKRGKK RSMSGNNQSS GHIASHTSNH YPSHDYSLNQ
901: RLTWPVDNYD RGFTGFPNPD YNNNQWGQPE GPQFYHLYQP LDPRYRNY
101: DFDLEQKAEV EKRKREVEQL EKFTTRMESV ERVSDEKLME LGLRATELEL KMEEVEKHRE RIVAGDKLRG EFEPLVSLLA KNMGLSVTMP VKCSTLYLNE
201: NADEMVKKNT ALARMVPYLD PAKVVLDAIE GSFKEYWKKD LGEADDRVVN SWIVLLENLI KMNLKITPQV KQEATPLGIA WLGKAKANMK NDPPQVFGCA
301: LFLAAYGLGS LTTHGVLLTL VERFLLYDHA PKLFRLLGLE EKVSGAVETL KKKEEYLATL KFICEFRLYK LCPGGRPGEL LIEFFDSSDK AARVIAGTGT
401: SMEAQKARRE KKKADAAMAI KYIKEAKAET MFPAKILKRL AVVKNDESAQ RAMEPVQKSY EKRQSTTKGV EKSEAKSSIP YEQKHVIKRP RLTEPTAPSQ
501: NLTVKQPEVV CVPTGKQVKE SGADHQPDTI ATHPSGTETK LNILSGSIKA DMLRELVEKQ PLKESEDLSN ALKCTPDPAK LFLDTSMALC PTNTEGGYEF
601: KMLITSASCS LLLNQLKKLL PKIGHPVKGD AKKLAVYWKD KIAKSKRDQL EVICFLQFLG IFGIVSEFKA DDLLGLLDNS YWQTVSPDLC QFLGLDDAIP
701: GFIQNLIKTG HRIKAIDYIY SFGMVHRFQP VSAIINDSLR ITKESAEKSY REAKNESTTQ VAAIDRQVRA LRAAIKCISC HKLESEFQLG DLEEQIKSLL
801: KLRRNTSNGS GSGSASSKPD STIKQSQTAK PPTVAEVAPV TSNIPLEPST EAASSSASKP FSKKNKRGKK RSMSGNNQSS GHIASHTSNH YPSHDYSLNQ
901: RLTWPVDNYD RGFTGFPNPD YNNNQWGQPE GPQFYHLYQP LDPRYRNY
Arabidopsis Description
FRL5FRIGIDA-like protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q5XV31]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.