Factsheet for Bra023825.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000891.1-P
Bra008559.1-P
Bra010203.1-P
Bra012254.1-P
Bra013209.1-P
Bra016445.1-P
Bra025852.1-P
Bra032421.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22440.1	Bra032421.1-P	AT1G06450.1	21798944
AT3G22440.1	Bra012254.1-P	AT1G20880.1	21798944
AT3G22440.1	Bra016445.1-P	AT1G20880.1	21798944
AT3G22440.1	Bra025852.1-P	AT1G20880.1	21798944
AT3G22440.1	Bra010203.1-P	AT1G33470.1	21798944
AT3G22440.1	Bra013209.1-P	AT2G04400.1	15714319
AT3G22440.1	Bra000891.1-P	AT4G02150.1	21798944
AT3G22440.1	Bra008559.1-P	AT4G02150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34252	Canola	cytosol, nucleus, plastid	97.38	99.62
CDY46317	Canola	cytosol, nucleus, plastid	97.38	99.05
AT3G22440.1	Thale cress	cytosol, nucleus, plastid	90.07	90.41
VIT_05s0020g03470.t01	Wine grape	nucleus	69.29	70.88
KRG91301	Soybean	cytosol	66.67	67.94
KRH35520	Soybean	cytosol	67.42	67.92
Solyc09g076050.2.1	Tomato	nucleus	65.17	67.7
PGSC0003DMT400077344	Potato	nucleus	64.42	66.93
GSMUA_Achr2P12700_001	Banana	nucleus	49.63	54.19
GSMUA_Achr7P01520_001	Banana	nucleus	48.88	53.48
GSMUA_Achr4P28440_001	Banana	cytosol	29.03	50.49
GSMUA_AchrUn_...	Banana	cytosol, nucleus	21.54	49.15
Os07t0173200-02	Rice	cytosol	45.32	45.32
Os03t0794900-01	Rice	nucleus	44.76	43.45
Zm00001d007835_P002	Maize	cytosol, endoplasmic reticulum, nucleus	43.82	40.48
Zm00001d018911_P001	Maize	cytosol	45.69	40.2
HORVU5Hr1G104870.1	Barley	cytosol	41.57	40.0
KXG34492	Sorghum	nucleus	45.51	39.32
TraesCS5D01G442300.1	Wheat	cytosol	40.64	39.31
TraesCS5A01G434500.1	Wheat	cytosol	40.64	39.17
TraesCS5B01G437500.2	Wheat	cytosol	40.64	39.1
Bra020704.1-P	Field mustard	cytosol	27.15	27.94
Bra036176.1-P	Field mustard	cytosol	25.47	26.15
Bra037489.1-P	Field mustard	cytosol	26.4	25.78
Bra008624.1-P	Field mustard	cytosol	20.6	24.39
HORVU3Hr1G033190.1	Barley	nucleus	4.49	22.64
Bra023207.1-P	Field mustard	cytosol	18.91	21.91
Bra035723.1-P	Field mustard	plastid	11.8	17.21
Bra029192.1-P	Field mustard	nucleus, plastid	16.85	15.33
Bra036105.1-P	Field mustard	nucleus	18.35	11.75
Bra009973.1-P	Field mustard	cytosol	17.79	10.93
Bra037488.1-P	Field mustard	cytosol	0.19	0.11

Protein Annotations

EnsemblPlants:Bra023825.1	EnsemblPlants:Bra023825.1-P	EnsemblPlantsGene:Bra023825	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150
GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	InterPro:Frigida	PANTHER:PTHR31791
PANTHER:PTHR31791:SF2	PFAM:PF07899	SEG:seg	UniParc:UPI000254434F	UniProt:M4E4X1	MapMan:35.1

Description

AT3G22440 (E=2e-224) | hydroxyproline-rich glycoprotein family protein

Coordinates

chrA01:-:20218384..20220207

Molecular Weight (calculated)

58971.5 Da

IEP (calculated)

7.171

GRAVY (calculated)

-0.429

Length

534 amino acids

Sequence
(BLAST)

001: MGSVSDPGEL TELAQPSFEE FQKQTSLMTS CTLLWKELSD HFTTLEENLM KKSEALKEMI GALDSQTQSS LESLKRREAT IERSVEIVAG KVGERARAAL
101: ESLEKARGGG DDGGGGGEVD DEEGLLSTLK SLCLKMDARG FWSFVTARKK ELEGLRSQIP AALVDCVDPA MLVLEAISEV FPVDKRGSGE KMTNDFGWAC
201: VVILESLAPV MVDPVIGKTR LLVTPSVKEK AKEIAETWKA SLEERGRVEN VKTPDVHTFL QHLVTFGIVK SEDLGLYRKL VVGSAWRKQM PKLAVLVGLG
301: DQMPDMIEEL ISRGQQLDAV HFTYEVGLVD KFPPVPLLKA YLRDAKKTVA EDSSNTGRAS HLVARKEQSA LKAVLKCIEE YKLEEEFPPE NLKKRLEQLE
401: KTKTEKRKPA AVPANKRTRA SYNGPMPPAK AGRITNAYVS SFPFIRSPSH SPQYASPAAA YPSPPTTVYS NRSPPYPYSP ELIPASYQAS PIGYPAYNGY
501: CNGPVPVPAP APQVYHPHYP QQHHQHAHHQ QAYY

Best Arabidopsis Sequence Match ( AT3G22440.1 )
(BLAST)

001: MGSVPDPGEL TELAQPSFEE FQKQTSLMTS CTLLWQELSD HFTSLEQNLM KKSEALKQMI ETLDNQTQTS LESLKRREVT IDHSVEIVAG KVGERARAAL
101: ESLEKARDGC GDGSNDDSGD VDDEEGLLSA LKSLCLKMDA RGFWNFVTAR KKELENLRSK IPAALVDCVD PAMLVLEAIS EVFPVDTRGD KVSNDYGWAC
201: VVILESLTPV IVDPVIGKSR LLVTPSVKEK AKEIAETWKK SLEERGRIEN VKTPDVHTFL QHLVTFGIVK SEDLALYRKL VVGSAWRKQM PKLAVSVGLG
301: DQMPDMIEEL ISRGQQLDAV HFTYEVGLVD KFPPVPLLKA YLRDAKKSAA SIMEDSSNTG RATHLVARKE QSALKAVLKC IEEYKLEEEF PPENLKKRLD
401: QLEKTKTEKR KPAAVPANKR TRASYNGPMP PAKAGRITNA YVSSFPFIRS PSHSPQYASP AAYPSPPTTV YSNRSPPYPY SPEIIPGSYQ GSPIGYPAYN
501: GYCNGPVPAP APPVYHPHHH QHHQFHHQQH YY

Arabidopsis Description

FRL4AFRIGIDA-like protein 4a [Source:UniProtKB/Swiss-Prot;Acc:Q9LUV4]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.