Factsheet for Bra008624.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra018126.1-P
Bra029192.1-P
Bra035723.1-P
Bra039198.1-P
Bra039379.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G16320.1	Bra039198.1-P	AT2G23420.1	21798944
AT5G16320.1	Bra039379.1-P	AT3G13222.1	21798944
AT5G16320.1	Bra018126.1-P	AT3G47620.1	21798944
AT5G16320.1	Bra029192.1-P	AT4G00650.1	19429606
AT5G16320.1	Bra035723.1-P	AT4G00650.1	19429606

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69452	Canola	cytosol	97.56	97.56
AT5G16320.1	Thale cress	nucleus	66.3	63.62
Bra023207.1-P	Field mustard	cytosol	50.55	49.46
KRH46301	Soybean	cytosol	35.7	29.49
KRG98570	Soybean	cytosol, nucleus, plastid	35.7	29.33
VIT_19s0090g01700.t01	Wine grape	cytosol	24.61	28.83
KRH73863	Soybean	nucleus	31.71	27.55
Bra020704.1-P	Field mustard	cytosol	26.83	23.31
Bra036176.1-P	Field mustard	cytosol	26.39	22.88
Bra037489.1-P	Field mustard	cytosol	26.83	22.12
Bra023825.1-P	Field mustard	cytosol, nucleus, plastid	24.39	20.6
Bra035723.1-P	Field mustard	plastid	14.19	17.49
Bra029192.1-P	Field mustard	nucleus, plastid	16.85	12.95
Bra036105.1-P	Field mustard	nucleus	21.73	11.75
Bra009973.1-P	Field mustard	cytosol	20.4	10.59
PGSC0003DMT400036725	Potato	nucleus	3.33	5.51
Bra037488.1-P	Field mustard	cytosol	0.22	0.11

Protein Annotations

EnsemblPlants:Bra008624.1	EnsemblPlants:Bra008624.1-P	EnsemblPlantsGene:Bra008624	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150
GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	InterPro:Frigida	ncoils:Coil
PANTHER:PTHR31791	PANTHER:PTHR31791:SF13	PFAM:PF07899	SEG:seg	UniParc:UPI0002544A56	UniProt:M4CWM7
MapMan:35.1	:	:	:	:	:

Description

AT5G16320 (E=1e-107) FRL1 | FRL1 (FRIGIDA LIKE 1)

Coordinates

chrA10:-:13128864..13130219

Molecular Weight (calculated)

50835.7 Da

IEP (calculated)

7.906

GRAVY (calculated)

-0.546

Length

451 amino acids

Sequence
(BLAST)

001: MTETETIAAA INQIDEKKQK LKKAFDDLQS HRSLLSPSFP LSWSDIDSHF SSLQSSLSNR FRLLQSQPPS PNNASPRIET ADDPEPPLVV IRPELRALCE
101: KMDSTGLSKF LADHWDDDAM PNQELSAAFR YSPDPATMVL NAIDGSSKGK SVDVRRVFVL LMEALIEIND KNITLDTKEK AKKVADNWNT KINNKPFEAL
201: LFLHLLAAFE LGSEFNSEEL SRYVVMIAKY KQSTLLCNKI CLDKERVGEV ITKLLSIGKP ILAVRFMYEC GRTDGFEPVS VLKGYVKEAR EAAERVCKED
301: KYSLKSQNEA TDKEVSALRA VIKIIKDRGL EAEFSEERVE ERVEELERQK AQRKRNVEPP QPKPKGRKRP RDRTQVYRQE AGGVMIEPSH HHGLQLNPFG
401: VVNPARGGII GPYTNQLAPG LYNSAAPPQS VYYGQQTGFV MPPFHPAYYS Q

Best Arabidopsis Sequence Match ( AT5G16320.1 )
(BLAST)

001: MTASETIATA INQIDEKKEK LKKAFDDLQA HRSLLSPSFS LSWSEIDSHF SSLQSSLASR FRLLHSTSPL EHDSYRIDAS DAGKSSSSEE VSEQPVVEPE
101: LRALCEKIDG IGLIKYLIRI WDDETPLNQE VSAAIRYSPD TASMVLDAIE GSNYTPSSSG RSFDVRRVFV LLMEVLIEIN ANITVDTRNR AKKLAYHWKS
201: KVGVKPFEAL VFLHLVAAFE LGSEFDTEEL SDYVFMIAKY KQATLVCNKI GVDRKRVGKL IKTLLDSGKP ILAVKFMYEC GMTDEFEPIP VLKSYIKDCR
301: EAALRVCVED NYSLKSQNEA SDKEVSALKP LIKIIKDQNL ESEFTQEKVE ERVEELEKNK ALRKRNTTNP PKQEPQQKGK KRTRDCKNGS QVPVPSQQLL
401: SRPEALLMPE HSHHGLQLNP YGLMTSAFSG VVVNPLTGLF GSGATPQSLY YAQQTGYVLP PQYHPPYYSQ

Arabidopsis Description

FRL1FRIGIDA-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFF1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.