CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71688
CDY05835
CDY24170
CDY24202
CDY32645
CDY36943
CDY38847
CDY43361
CDY46076
CDY63965

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G16320.1	CDY46076	AT2G23420.1	21798944
AT5G16320.1	CDY63965	AT2G23420.1	21798944
AT5G16320.1	CDY24202	AT3G13222.1	21798944
AT5G16320.1	CDY43361	AT3G13222.1	21798944
AT5G16320.1	CDY24170	AT3G47620.1	21798944
AT5G16320.1	CDY36943	AT3G47620.1	21798944
AT5G16320.1	CDX71688	AT4G00650.1	19429606
AT5G16320.1	CDY05835	AT4G00650.1	19429606
AT5G16320.1	CDY32645	AT4G00650.1	19429606
AT5G16320.1	CDY38847	AT4G00650.1	19429606

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008624.1-P	Field mustard	cytosol	97.56	97.56
CDY55572	Canola	nucleus	73.17	92.18
CDY67200	Canola	cytosol, nucleus	27.72	89.29
AT5G16320.1	Thale cress	nucleus	66.96	64.26
CDY12290	Canola	cytosol	50.33	51.01
CDY67951	Canola	cytosol	51.0	49.89
VIT_19s0090g01700.t01	Wine grape	cytosol	25.06	29.35
KRH46301	Soybean	cytosol	35.03	28.94
KRG98570	Soybean	cytosol, nucleus, plastid	35.03	28.78
KRH73863	Soybean	nucleus	31.93	27.75
CDY00062	Canola	cytosol, mitochondrion, nucleus, plastid	11.53	24.41
CDY05684	Canola	cytosol	27.27	23.79
CDY00066	Canola	cytosol	28.16	23.78
CDY48750	Canola	cytosol	27.05	23.15
CDY46317	Canola	cytosol, nucleus, plastid	24.83	21.33
CDY34252	Canola	cytosol, nucleus, plastid	24.39	21.07
CDX99994	Canola	peroxisome	14.19	19.16
CDY19713	Canola	cytosol	12.86	19.08
CDY38318	Canola	nucleus	21.29	18.08
CDY05835	Canola	cytosol, nucleus, plastid	14.19	17.83
CDX71688	Canola	nucleus	19.07	14.7
CDY32645	Canola	nucleus	17.52	13.55
CDY38847	Canola	nucleus, plastid	16.85	12.75
CDX86173	Canola	cytosol	20.84	10.88
CDX99996	Canola	extracellular	3.77	10.56
CDX80668	Canola	cytosol, mitochondrion, plasma membrane	20.84	10.54
CDX86307	Canola	nucleus	27.27	8.24
CDX85335	Canola	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	27.05	7.54
CDX99995	Canola	cytosol, nucleus, peroxisome	6.43	6.05
CDY19712	Canola	cytosol, nucleus, peroxisome	6.21	5.85
PGSC0003DMT400036725	Potato	nucleus	3.33	5.51

Protein Annotations

EnsemblPlants:CDX69452	EnsemblPlantsGene:GSBRNA2T00135430001	InterPro:Frigida	ncoils:Coil	PANTHER:PTHR31791	PANTHER:PTHR31791:SF13
PFAM:PF07899	ProteinID:CDX69452	ProteinID:CDX69452.1	SEG:seg	UniParc:UPI0004EDDDE4	MapMan:35.1

Description

BnaA10g18010D

Coordinates

chrLK031790:-:298072..299598

Molecular Weight (calculated)

50873.8 Da

IEP (calculated)

7.560

GRAVY (calculated)

-0.532

Length

451 amino acids

Sequence
(BLAST)

001: MTETEQIAAA INQIDEKKQK LKKAFDDLQS HRSLLSPSFP LSWSDIDSHF SSLQSSLSNR FRLLQPEPPS PNYSPRIETA DDPEPPLVVI RPELRALCEK
101: LDSIGLSKFL ADHWDDDAMP NQELSAAFRY SPDPATMVLN AIDGGSSKGK SVDVRRVFVL LMEALIEIND KNITLDTKEK AKKVADDWKT KINNKPFEAL
201: LFLHLLAAFE LGSEFNSEEL SRYVVMIAKY KQATLLCNKI CLDKERVGEV ITKLLSIGKP ILAVRFMYEC GRTDGFEPVS VLKGYVKEAR EAAERVCKED
301: KYSLKSQNEA TDKEVSALKA VIKIIKDRGL EAEFSEERVE ERVEELERQK AQRKRNVEPP QPKPKGRKRP RDRTQVYRQE AGGVMIEPSH HHGLQLNPFG
401: VVNPARGGII GPYTNQLAPG LYNSAAPPQS VYYGQQTGFV MPPFHPAYYS Q

Best Arabidopsis Sequence Match ( AT5G16320.1 )
(BLAST)

001: MTASETIATA INQIDEKKEK LKKAFDDLQA HRSLLSPSFS LSWSEIDSHF SSLQSSLASR FRLLHSTSPL EHDSYRIDAS DAGKSSSSEE VSEQPVVEPE
101: LRALCEKIDG IGLIKYLIRI WDDETPLNQE VSAAIRYSPD TASMVLDAIE GSNYTPSSSG RSFDVRRVFV LLMEVLIEIN ANITVDTRNR AKKLAYHWKS
201: KVGVKPFEAL VFLHLVAAFE LGSEFDTEEL SDYVFMIAKY KQATLVCNKI GVDRKRVGKL IKTLLDSGKP ILAVKFMYEC GMTDEFEPIP VLKSYIKDCR
301: EAALRVCVED NYSLKSQNEA SDKEVSALKP LIKIIKDQNL ESEFTQEKVE ERVEELEKNK ALRKRNTTNP PKQEPQQKGK KRTRDCKNGS QVPVPSQQLL
401: SRPEALLMPE HSHHGLQLNP YGLMTSAFSG VVVNPLTGLF GSGATPQSLY YAQQTGYVLP PQYHPPYYSQ

Arabidopsis Description

FRL1FRIGIDA-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFF1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.