Skip to main content
crop-pal logo
Canola
Search for another protein from :
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX73279
CDX90948
CDX94822
CDX96615
CDX97257
CDY00860
CDY01349
CDY01921
CDY06214
CDY09972
CDY09974
CDY15081
CDY17450
CDY29496
CDY31508
CDY31859
CDY33653
CDY43301
CDY64806
CDY66247

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G22440.1 CDY06214 AT1G06450.1 21798944
AT3G22440.1 CDY09972 AT1G06450.1 21798944
AT3G22440.1 CDY09974 AT1G06450.1 21798944
AT3G22440.1 CDX96615 AT1G20880.1 21798944
AT3G22440.1 CDY01349 AT1G20880.1 21798944
AT3G22440.1 CDY29496 AT1G20880.1 21798944
AT3G22440.1 CDY31508 AT1G20880.1 21798944
AT3G22440.1 CDY31859 AT1G20880.1 21798944
AT3G22440.1 CDY33653 AT1G20880.1 21798944
AT3G22440.1 CDX73279 AT1G33470.1 21798944
AT3G22440.1 CDX94822 AT2G04400.1 15714319
AT3G22440.1 CDY00860 AT2G04400.1 15714319
AT3G22440.1 CDY15081 AT2G04400.1 15714319
AT3G22440.1 CDY17450 AT2G04400.1 15714319
AT3G22440.1 CDY43301 AT2G04400.1 15714319
AT3G22440.1 CDY66247 AT2G04400.1 15714319
AT3G22440.1 CDX90948 AT4G02150.1 21798944
AT3G22440.1 CDX97257 AT4G02150.1 21798944
AT3G22440.1 CDY01921 AT4G02150.1 21798944
AT3G22440.1 CDY64806 AT4G02150.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY46317 Canola cytosol, nucleus, plastid 66.48 67.24
AT3G22440.1 Thale cress cytosol, nucleus, plastid 67.04 66.92
CDY34252 Canola cytosol, nucleus, plastid 64.97 66.09
VIT_05s0020g03470.t01 Wine grape nucleus 52.92 53.83
KRH35520 Soybean cytosol 51.41 51.51
KRG91301 Soybean cytosol 50.66 51.34
Solyc09g076050.2.1 Tomato nucleus 49.15 50.78
PGSC0003DMT400077344 Potato nucleus 48.59 50.19
GSMUA_Achr4P28440_001 Banana cytosol 25.8 44.63
GSMUA_Achr7P01520_001 Banana nucleus 37.66 40.98
GSMUA_Achr2P12700_001 Banana nucleus 37.29 40.49
Os07t0173200-02 Rice cytosol 34.46 34.27
Os03t0794900-01 Rice nucleus 35.4 34.18
GSMUA_AchrUn_... Banana cytosol, nucleus 14.31 32.48
TraesCS5D01G442300.1 Wheat cytosol 33.33 32.07
Zm00001d007835_P002 Maize cytosol, endoplasmic reticulum, nucleus 34.46 31.66
TraesCS5A01G434500.1 Wheat cytosol 32.96 31.59
TraesCS5B01G437500.2 Wheat cytosol 32.96 31.53
HORVU5Hr1G104870.1 Barley cytosol 32.96 31.53
Zm00001d018911_P001 Maize cytosol 35.4 30.97
KXG34492 Sorghum nucleus 34.46 29.61
CDY00062 Canola cytosol, mitochondrion, nucleus, plastid 9.98 24.88
CDY05684 Canola cytosol 21.85 22.44
CDY48750 Canola cytosol 22.22 22.39
CDY55572 Canola nucleus 15.07 22.35
CDY67200 Canola cytosol, nucleus 5.84 22.14
CDX69452 Canola cytosol 18.08 21.29
CDY00066 Canola cytosol 20.9 20.79
CDY12290 Canola cytosol 15.82 18.88
CDY19713 Canola cytosol 10.73 18.75
CDY67951 Canola cytosol 16.01 18.44
CDX99994 Canola peroxisome 10.92 17.37
CDY05835 Canola cytosol, nucleus, plastid 10.73 15.88
CDX71688 Canola nucleus 15.63 14.19
CDY32645 Canola nucleus 14.88 13.55
HORVU3Hr1G033190.1 Barley nucleus 2.64 13.21
CDY38847 Canola nucleus, plastid 14.69 13.09
CDX86173 Canola cytosol 15.25 9.38
CDX99996 Canola extracellular 2.82 9.32
CDX80668 Canola cytosol, mitochondrion, plasma membrane 15.63 9.3
CDX86307 Canola nucleus 24.11 8.57
CDX85335 Canola cytosol, endoplasmic reticulum, mitochondrion, plasma membrane 24.29 7.98
CDX99995 Canola cytosol, nucleus, peroxisome 3.01 3.34
CDY19712 Canola cytosol, nucleus, peroxisome 3.01 3.34
Protein Annotations
EnsemblPlants:CDY38318EnsemblPlantsGene:GSBRNA2T00065703001GO:GO:0000003GO:GO:0007275GO:GO:0008150GO:GO:0009791
GO:GO:0009908GO:GO:0009987GO:GO:0030154InterPro:Frigidancoils:CoilPANTHER:PTHR31791
PANTHER:PTHR31791:SF2PFAM:PF07899ProteinID:CDY38318ProteinID:CDY38318.1SEG:segUniParc:UPI0004EEF409
UniProt:A0A078HNB7MapMan:35.1::::
Description
BnaC05g30110DFRIGIDA-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078HNB7]
Coordinates
chrLK032421:-:216599..218858
Molecular Weight (calculated)
59264.2 Da
IEP (calculated)
7.228
GRAVY (calculated)
-0.402
Length
531 amino acids
Sequence
(BLAST)
001: MTSCSLMWKD LTDHFTTLEQ NLMKKSEALK KMIETLDNQT QTSLESLKRR EVTIDRSVEI VAEKVGKRVR AALESLEKAR DGGDDDDSEV DEDDEEGLLS
101: ALKSLCWKMD ARGFWSFVTA RKKELENPRS KIPAALGDCV DPAMLVLEAI SEVFPVEKRE SGEKMMNDFA WACVVILESL GPVMVDPVIG KSRLIVTPSV
201: KEKAEEVAET WKASLEERGR VEDVKTPDVH TFLQHLVMFG IFRSEDLGLY RKLVVGSAWR KQMPKLAVSV GLGDQMPDMI EELISRGHQL DAVHFTYEVG
301: LVDKFPPDSS NTGRPSNLVA QKEQSALKAV LKCIEEYKLE EEFPPENLKK RLDQLEKTKT DKRKPAAVPA NKRTRASYNG PMPPANVSQT HTSLPSPSSD
401: HPLTHLSTLH HQLTHPHLLL STATEAHLIH SRLSLSRAHT KLTYRLSSVQ RLLQRSGSCY CPSSSGLPPT LPSAAAPPTR SPSASLLLNL EKSRRKDGNN
501: QQPLIPVTTT LVYSLRLHLC LSTFCCNIFE A
Best Arabidopsis Sequence Match ( AT3G22440.1 )
(BLAST)
001: MGSVPDPGEL TELAQPSFEE FQKQTSLMTS CTLLWQELSD HFTSLEQNLM KKSEALKQMI ETLDNQTQTS LESLKRREVT IDHSVEIVAG KVGERARAAL
101: ESLEKARDGC GDGSNDDSGD VDDEEGLLSA LKSLCLKMDA RGFWNFVTAR KKELENLRSK IPAALVDCVD PAMLVLEAIS EVFPVDTRGD KVSNDYGWAC
201: VVILESLTPV IVDPVIGKSR LLVTPSVKEK AKEIAETWKK SLEERGRIEN VKTPDVHTFL QHLVTFGIVK SEDLALYRKL VVGSAWRKQM PKLAVSVGLG
301: DQMPDMIEEL ISRGQQLDAV HFTYEVGLVD KFPPVPLLKA YLRDAKKSAA SIMEDSSNTG RATHLVARKE QSALKAVLKC IEEYKLEEEF PPENLKKRLD
401: QLEKTKTEKR KPAAVPANKR TRASYNGPMP PAKAGRITNA YVSSFPFIRS PSHSPQYASP AAYPSPPTTV YSNRSPPYPY SPEIIPGSYQ GSPIGYPAYN
501: GYCNGPVPAP APPVYHPHHH QHHQFHHQQH YY
Arabidopsis Description
FRL4AFRIGIDA-like protein 4a [Source:UniProtKB/Swiss-Prot;Acc:Q9LUV4]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.