CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY34252
CDY38318
CDY46317

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04400.1	CDY34252	AT3G22440.1	15714319
AT2G04400.1	CDY38318	AT3G22440.1	15714319
AT2G04400.1	CDY46317	AT3G22440.1	15714319

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013209.1-P	Field mustard	plastid	98.76	98.76
CDY15081	Canola	plastid	93.78	94.02
AT2G04400.1	Thale cress	plastid	85.07	85.07
CDY43301	Canola	plastid	58.21	80.41
VIT_12s0057g01240.t01	Wine grape	cytosol	62.19	68.87
CDY00860	Canola	cytosol	15.17	64.21
TraesCS7A01G512300.1	Wheat	cytosol	51.49	62.92
KRH14867	Soybean	nucleus, plastid	60.95	62.5
KRH73214	Soybean	nucleus, plastid	60.7	62.09
CDY17450	Canola	plastid	54.98	59.73
Solyc03g111850.2.1	Tomato	plastid	60.95	59.61
PGSC0003DMT400039190	Potato	plastid	60.45	59.12
HORVU7Hr1G114660.3	Barley	mitochondrion	51.49	58.64
GSMUA_Achr3P04280_001	Banana	plastid	56.97	57.54
TraesCS7B01G423900.1	Wheat	plastid	53.98	57.41
TraesCS7D01G501700.1	Wheat	plastid	50.5	56.55
GSMUA_Achr3P12080_001	Banana	plastid	53.23	54.59
Zm00001d025652_P005	Maize	mitochondrion, plastid	56.47	54.44
EES12321	Sorghum	plastid	56.47	53.79
Zm00001d024393_P001	Maize	plastid	51.24	53.79
HORVU2Hr1G081460.2	Barley	plastid	54.48	53.28
EES05044	Sorghum	plastid	50.25	53.16
EES14765	Sorghum	plastid	50.25	52.88
TraesCS2B01G348500.1	Wheat	plastid	53.73	52.81
TraesCS2D01G329500.1	Wheat	plastid	53.48	52.18
TraesCS5D01G173900.1	Wheat	plastid	48.76	51.99
TraesCS5A01G169500.1	Wheat	plastid	48.76	51.99
CDX94822	Canola	plastid	22.39	51.72
TraesCS5B01G166300.1	Wheat	plastid	48.51	51.72
HORVU5Hr1G052150.3	Barley	plastid	48.51	51.72
TraesCS2A01G335200.1	Wheat	plastid	52.99	51.57
CDY00859	Canola	mitochondrion	13.93	50.91
Zm00001d020008_P001	Maize	plastid	48.01	49.61
Os09t0255400-02	Rice	plastid	47.51	49.61
OQU89210	Sorghum	plastid	48.51	48.39
CDX86321	Canola	plastid	59.45	47.9
CDX85318	Canola	plastid	60.45	46.73
Os08t0320400-01	Rice	plastid	23.63	41.13
TraesCS3D01G285000.1	Wheat	cytosol	21.39	35.39

Protein Annotations

KEGG:00400+4.1.1.48	Gene3D:3.20.20.70	MapMan:4.1.5.3.4	GO:A0A078JLJ1	UniProt:A0A078JLJ1	InterPro:Aldolase_TIM
EnsemblPlants:CDY66247	ProteinID:CDY66247	ProteinID:CDY66247.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004425
GO:GO:0006568	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00052376001	InterPro:IPR013785
InterPro:Indole-3-GlycerolPSynthase_CS	InterPro:Indole-3-glycerol_P_synth	HAMAP:MF_00134_B	PFAM:PF00218	ScanProsite:PS00614	PANTHER:PTHR22854
PANTHER:PTHR22854:SF10	InterPro:RibuloseP-bd_barrel	SUPFAM:SSF51366	UniPathway:UPA00035	UniParc:UPI0004EE2269	SEG:seg

Description

BnaA03g57920DBnaA03g57920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JLJ1]

Coordinates

chrLK035167:-:10637..13114

Molecular Weight (calculated)

44113.3 Da

IEP (calculated)

8.567

GRAVY (calculated)

-0.188

Length

402 amino acids

Sequence
(BLAST)

001: MDALVPVQSA GQRLPLRLLS PSLHRCIGSV SIRRSVSGFA MDTRISSRSP SQFTIRSQQS DLKESLGGVA SSSDVRIKEW EVDMYQNELA ISQGIRIRRK
101: PPSKAPLGYS GPFELRLLNG QVADSPSNIL EEITWYKDHE VSRMKELNPL EALKKAVENA PPTRDFVGAL RSAHQRTGFP GLIAEVKKAS PSRGILKENF
201: DPVEIAQAYE RGGAACLSVL TDQKYFKGGF ENLEAIRSAG VKCPLLCKEF VVDPWQIYYA RAKGADAVLL IAAILTDLEI TYLLKLSKKL GLAALVEVHD
301: EREMGRVLGI EGIELVGINN RSLETFKVDI SNTKKLLEGE HGRQIREKDM IVVGESGLFT PDDIAYVQAA GVKAVLVGES IVKQNDPEKG IAGLFGRNIS
401: QT

Best Arabidopsis Sequence Match ( AT2G04400.1 )
(BLAST)

001: MEGLVPVQRL PIKVASPSLY RCNNSVSIRR SISGFAMDRK INFRAPSQFS IRAQQSDLKE SLAVSSSSVE DKGNVLRIKE WEVEMYQEEL AISQGIRIRR
101: KPPSKAPLGY SGPFELRLHN NDADSPRNIL EEITWYKDVE VSRMKELNPL DVLKKAVEDA PPTRDFVGAL RMAHKRTGFP GLIAEVKKAS PSRGILKENF
201: DPVEIAQAYE KGGAACLSVL TDQKYFQGGF ENLEAIRSAG VKCPLLCKEF VVDPWQIYYA RTKGADAVLL IAAVLADLEI TFLLKICKKL SLAALVEVHD
301: EREMGRVLGI EGIELVGINN RSLETFEVDI SNTKKLLEGE HGRQIRERDM IVVGESGLFT PDDIAYVQAA GVKAVLVGES IVKQNDPEKG IAGLFGRNIS
401: HT

Arabidopsis Description

IGPSIndole-3-glycerol phosphate synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P49572]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.