Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS5A01G434500.1 | |
| TraesCS5B01G437500.2 | |
| TraesCS5D01G442300.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G04400.1 | TraesCS5A01G434500.1 | AT3G22440.1 | 15714319 |
| AT2G04400.1 | TraesCS5B01G437500.2 | AT3G22440.1 | 15714319 |
| AT2G04400.1 | TraesCS5D01G442300.1 | AT3G22440.1 | 15714319 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G114660.3 | Barley | mitochondrion | 95.14 | 88.67 |
| TraesCS7B01G423900.1 | Wheat | plastid | 95.44 | 83.07 |
| TraesCS7D01G501700.1 | Wheat | plastid | 88.75 | 81.34 |
| Zm00001d024393_P001 | Maize | plastid | 83.59 | 71.8 |
| EES14765 | Sorghum | plastid | 82.67 | 71.2 |
| EES05044 | Sorghum | plastid | 82.07 | 71.05 |
| TraesCS5A01G169500.1 | Wheat | plastid | 74.16 | 64.72 |
| VIT_12s0057g01240.t01 | Wine grape | cytosol | 64.13 | 58.13 |
| Os08t0320400-01 | Rice | plastid | 40.43 | 57.58 |
| GSMUA_Achr3P12080_001 | Banana | plastid | 68.09 | 57.14 |
| KRH14867 | Soybean | nucleus, plastid | 63.22 | 53.06 |
| KRH73214 | Soybean | nucleus, plastid | 62.92 | 52.67 |
| Bra037502.1-P | Field mustard | plastid | 61.09 | 52.62 |
| AT5G48220.1 | Thale cress | plastid | 60.49 | 52.51 |
| AT2G04400.1 | Thale cress | plastid | 63.83 | 52.24 |
| CDY66247 | Canola | plastid | 62.92 | 51.49 |
| Bra013209.1-P | Field mustard | plastid | 62.61 | 51.24 |
| CDY15081 | Canola | plastid | 62.31 | 51.12 |
| Solyc03g111850.2.1 | Tomato | plastid | 62.31 | 49.88 |
| PGSC0003DMT400039190 | Potato | plastid | 61.7 | 49.39 |
| CDY00860 | Canola | cytosol | 13.98 | 48.42 |
| TraesCS2A01G335200.1 | Wheat | plastid | 60.49 | 48.18 |
| CDX86321 | Canola | plastid | 60.49 | 39.88 |
| CDX85318 | Canola | plastid | 60.49 | 38.27 |
| CDY43301 | Canola | plastid | 33.43 | 37.8 |
| CDX94822 | Canola | plastid | 19.45 | 36.78 |
| CDY17450 | Canola | plastid | 31.61 | 28.11 |
Protein Annotations
| KEGG:00400+4.1.1.48 | Gene3D:3.20.20.70 | MapMan:4.1.5.3.4 | InterPro:Aldolase_TIM | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004425 | GO:GO:0006568 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | InterPro:IPR013785 |
| InterPro:Indole-3-GlycerolPSynthase_CS | InterPro:Indole-3-glycerol_P_synth | HAMAP:MF_00134_B | PFAM:PF00218 | ScanProsite:PS00614 | PANTHER:PTHR22854 |
| PANTHER:PTHR22854:SF13 | InterPro:RibuloseP-bd_barrel | SUPFAM:SSF51366 | EnsemblPlantsGene:TraesCS7A01G512300 | EnsemblPlants:TraesCS7A01G512300.1 | TIGR:cd00331 |
Description
No Description!
Coordinates
chr7A:-:699733347..699736640
Molecular Weight (calculated)
36004.6 Da
IEP (calculated)
5.318
GRAVY (calculated)
-0.039
Length
329 amino acids
Sequence
(BLAST)
(BLAST)
001: MEALERDQML NAVELEQWES GKSVNDIAAC QGIRIRRHCR PAASMAEIEA EMGAPRNILE KIIWDKEIEV AQGLARSPLN EVIESAGKAP PTRDFYGALA
101: AAHKRNGVPA LIAEVKKASP SRGVLRENFD PVEIAQAYEK HGAACLSILT DEKYFQGSFE NLQKVRKAGV KCPLLCKEFV VDKWQIYYAR AMGADAVLLI
201: AAVLTDLDIK CFLRICKELG LTALIEVHDE REMERVLAIN GVQLIGINNR SLETFIVDTS NTKTLLEKHG DAIREKGILV VGESGLFTPD DVAYVQNAGV
301: SAVLVGESLV KQADPGQAIA GLFGKELVH
101: AAHKRNGVPA LIAEVKKASP SRGVLRENFD PVEIAQAYEK HGAACLSILT DEKYFQGSFE NLQKVRKAGV KCPLLCKEFV VDKWQIYYAR AMGADAVLLI
201: AAVLTDLDIK CFLRICKELG LTALIEVHDE REMERVLAIN GVQLIGINNR SLETFIVDTS NTKTLLEKHG DAIREKGILV VGESGLFTPD DVAYVQNAGV
301: SAVLVGESLV KQADPGQAIA GLFGKELVH
001: MEGLVPVQRL PIKVASPSLY RCNNSVSIRR SISGFAMDRK INFRAPSQFS IRAQQSDLKE SLAVSSSSVE DKGNVLRIKE WEVEMYQEEL AISQGIRIRR
101: KPPSKAPLGY SGPFELRLHN NDADSPRNIL EEITWYKDVE VSRMKELNPL DVLKKAVEDA PPTRDFVGAL RMAHKRTGFP GLIAEVKKAS PSRGILKENF
201: DPVEIAQAYE KGGAACLSVL TDQKYFQGGF ENLEAIRSAG VKCPLLCKEF VVDPWQIYYA RTKGADAVLL IAAVLADLEI TFLLKICKKL SLAALVEVHD
301: EREMGRVLGI EGIELVGINN RSLETFEVDI SNTKKLLEGE HGRQIRERDM IVVGESGLFT PDDIAYVQAA GVKAVLVGES IVKQNDPEKG IAGLFGRNIS
401: HT
101: KPPSKAPLGY SGPFELRLHN NDADSPRNIL EEITWYKDVE VSRMKELNPL DVLKKAVEDA PPTRDFVGAL RMAHKRTGFP GLIAEVKKAS PSRGILKENF
201: DPVEIAQAYE KGGAACLSVL TDQKYFQGGF ENLEAIRSAG VKCPLLCKEF VVDPWQIYYA RTKGADAVLL IAAVLADLEI TFLLKICKKL SLAALVEVHD
301: EREMGRVLGI EGIELVGINN RSLETFEVDI SNTKKLLEGE HGRQIRERDM IVVGESGLFT PDDIAYVQAA GVKAVLVGES IVKQNDPEKG IAGLFGRNIS
401: HT
Arabidopsis Description
IGPSIndole-3-glycerol phosphate synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P49572]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.