CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG34492

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04400.1	KXG34492	AT3G22440.1	15714319

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05044	Sorghum	plastid	89.79	90.26
Zm00001d024393_P001	Maize	plastid	89.01	88.77
TraesCS7A01G512300.1	Wheat	cytosol	71.2	82.67
HORVU7Hr1G114660.3	Barley	mitochondrion	71.73	77.62
TraesCS7B01G423900.1	Wheat	plastid	72.77	73.55
TraesCS7D01G501700.1	Wheat	plastid	67.8	72.14
Os08t0320400-01	Rice	plastid	39.53	65.37
OQU89210	Sorghum	plastid	63.09	59.8
VIT_12s0057g01240.t01	Wine grape	cytosol	55.76	58.68
GSMUA_Achr3P12080_001	Banana	plastid	58.9	57.4
KRH14867	Soybean	nucleus, plastid	55.24	53.83
AT5G48220.1	Thale cress	plastid	53.4	53.83
KRH73214	Soybean	nucleus, plastid	54.71	53.18
Bra037502.1-P	Field mustard	plastid	52.88	52.88
Solyc03g111850.2.1	Tomato	plastid	56.54	52.55
AT2G04400.1	Thale cress	plastid	54.19	51.49
PGSC0003DMT400039190	Potato	plastid	55.24	51.34
EES12321	Sorghum	plastid	56.02	50.71
Bra013209.1-P	Field mustard	plastid	53.14	50.5
CDY66247	Canola	plastid	52.88	50.25
CDY15081	Canola	plastid	52.09	49.63
CDY00860	Canola	cytosol	10.99	44.21
CDX86321	Canola	plastid	52.62	40.28
CDX85318	Canola	plastid	51.83	38.08
CDY43301	Canola	plastid	28.8	37.8
CDX94822	Canola	plastid	15.71	34.48
CDY17450	Canola	plastid	26.7	27.57

Protein Annotations

KEGG:00400+4.1.1.48	Gene3D:3.20.20.70	MapMan:4.1.5.3.4	EntrezGene:8073231	InterPro:Aldolase_TIM	UniProt:C5YJF0
EnsemblPlants:EES14765	ProteinID:EES14765	ProteinID:EES14765.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004425
GO:GO:0006568	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR013785	InterPro:Indole-3-GlycerolPSynthase_CS
InterPro:Indole-3-glycerol_P_synth	HAMAP:MF_00134_B	PFAM:PF00218	ScanProsite:PS00614	PANTHER:PTHR22854	PANTHER:PTHR22854:SF13
InterPro:RibuloseP-bd_barrel	EnsemblPlantsGene:SORBI_3007G086600	SUPFAM:SSF51366	unigene:Sbi.1353	UniParc:UPI0001A87EDA	RefSeq:XP_002445270.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:11609951..11616217

Molecular Weight (calculated)

41928.6 Da

IEP (calculated)

7.462

GRAVY (calculated)

-0.168

Length

382 amino acids

Sequence
(BLAST)

001: MESLLASRSI RSSFSAIAAS TRGASPRPSR VATLAGSGAR PSRPLRAGPM DSILEVLAQD DMLNAKELVQ WENGLSFNDI AARQGIRIRR HFRPTASLKQ
101: IEEELGAPRN ILEKIVWDKE IEVAQGHAKK PIEEVTQAAR KAPPSRDFYG ALEAAYKRNG VPALIAEVKK ASPSRGVLRE NFNPVEIAQA YEKNGAACLS
201: ILTDEKYFQG SFENLEKVRT SGVKCPLLCK EFVIDKWQIY NARSKGADAI LLIAAVLPDI DIRNFLQICE ELGMTALIEV HDEREMERVL NINGVKLIGI
301: NNRSLETFVV DTSNTKMLLE KHGDSIREKG ILVVGESGLF TPDDVAYVQN AGVSAVLVGE SLVKQECPGR AIVGLFGKEL LH

Best Arabidopsis Sequence Match ( AT2G04400.1 )
(BLAST)

001: MEGLVPVQRL PIKVASPSLY RCNNSVSIRR SISGFAMDRK INFRAPSQFS IRAQQSDLKE SLAVSSSSVE DKGNVLRIKE WEVEMYQEEL AISQGIRIRR
101: KPPSKAPLGY SGPFELRLHN NDADSPRNIL EEITWYKDVE VSRMKELNPL DVLKKAVEDA PPTRDFVGAL RMAHKRTGFP GLIAEVKKAS PSRGILKENF
201: DPVEIAQAYE KGGAACLSVL TDQKYFQGGF ENLEAIRSAG VKCPLLCKEF VVDPWQIYYA RTKGADAVLL IAAVLADLEI TFLLKICKKL SLAALVEVHD
301: EREMGRVLGI EGIELVGINN RSLETFEVDI SNTKKLLEGE HGRQIRERDM IVVGESGLFT PDDIAYVQAA GVKAVLVGES IVKQNDPEKG IAGLFGRNIS
401: HT

Arabidopsis Description

IGPSIndole-3-glycerol phosphate synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P49572]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.