Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS5A01G434500.1 | |
| TraesCS5B01G437500.2 | |
| TraesCS5D01G442300.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G04400.1 | TraesCS5A01G434500.1 | AT3G22440.1 | 15714319 |
| AT2G04400.1 | TraesCS5B01G437500.2 | AT3G22440.1 | 15714319 |
| AT2G04400.1 | TraesCS5D01G442300.1 | AT3G22440.1 | 15714319 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G512300.1 | Wheat | cytosol | 81.34 | 88.75 |
| TraesCS7B01G423900.1 | Wheat | plastid | 92.48 | 87.83 |
| HORVU7Hr1G114660.3 | Barley | mitochondrion | 83.29 | 84.7 |
| Zm00001d024393_P001 | Maize | plastid | 73.82 | 69.19 |
| EES05044 | Sorghum | plastid | 71.87 | 67.89 |
| EES14765 | Sorghum | plastid | 72.14 | 67.8 |
| TraesCS5D01G173900.1 | Wheat | plastid | 65.74 | 62.6 |
| Os08t0320400-01 | Rice | plastid | 39.55 | 61.47 |
| GSMUA_Achr3P12080_001 | Banana | plastid | 61.0 | 55.87 |
| VIT_12s0057g01240.t01 | Wine grape | cytosol | 54.32 | 53.72 |
| CDY66247 | Canola | plastid | 56.55 | 50.5 |
| Bra013209.1-P | Field mustard | plastid | 56.27 | 50.25 |
| AT5G48220.1 | Thale cress | plastid | 52.65 | 49.87 |
| KRH14867 | Soybean | nucleus, plastid | 54.32 | 49.74 |
| Bra037502.1-P | Field mustard | plastid | 52.92 | 49.74 |
| AT2G04400.1 | Thale cress | plastid | 55.43 | 49.5 |
| CDY15081 | Canola | plastid | 55.15 | 49.38 |
| KRH73214 | Soybean | nucleus, plastid | 53.48 | 48.85 |
| CDY00860 | Canola | cytosol | 12.53 | 47.37 |
| PGSC0003DMT400039190 | Potato | plastid | 53.2 | 46.47 |
| Solyc03g111850.2.1 | Tomato | plastid | 52.92 | 46.23 |
| TraesCS2D01G329500.1 | Wheat | plastid | 52.65 | 45.87 |
| CDY43301 | Canola | plastid | 33.15 | 40.89 |
| CDX86321 | Canola | plastid | 52.65 | 37.88 |
| CDX85318 | Canola | plastid | 52.37 | 36.15 |
| TraesCS3D01G285000.1 | Wheat | cytosol | 23.96 | 35.39 |
| CDY17450 | Canola | plastid | 30.64 | 29.73 |
| CDX94822 | Canola | plastid | 13.65 | 28.16 |
Protein Annotations
| KEGG:00400+4.1.1.48 | Gene3D:3.20.20.70 | MapMan:4.1.5.3.4 | InterPro:Aldolase_TIM | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004425 | GO:GO:0006568 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | InterPro:IPR013785 |
| InterPro:Indole-3-GlycerolPSynthase_CS | InterPro:Indole-3-glycerol_P_synth | PFAM:PF00218 | ScanProsite:PS00614 | PANTHER:PTHR22854 | PANTHER:PTHR22854:SF13 |
| InterPro:RibuloseP-bd_barrel | SUPFAM:SSF51366 | EnsemblPlantsGene:TraesCS7D01G501700 | EnsemblPlants:TraesCS7D01G501700.1 | TIGR:cd00331 | SEG:seg |
Description
No Description!
Coordinates
chr7D:-:607538728..607541510
Molecular Weight (calculated)
39094.3 Da
IEP (calculated)
7.392
GRAVY (calculated)
-0.068
Length
359 amino acids
Sequence
(BLAST)
(BLAST)
001: MQALLAPPVL RASPSRSPAA RSPPPSRGLV ALAAAAARAR PLRCGPRDTV EALERDEMLN AVELGQWESG KSVNDIAACQ GIRIRRHCRP AASMAEVEVE
101: MGAPRNILEK IIWDKEIEVA QGLARNPLEE VIESAGKAPP TRDFYGALAA AHKRNGVPAL IAEVKKASPS KGVLRENFDP VQIAQAYEKH GAACLSILTD
201: EKYFQGSFEN LQKVRKAGVK CPLLCKEFVV DKWQIYYARA MGADAVLLIA AVLTDLDIKY FLRICKELGL TALIEVHDER EMERVLAING VQLIGINNRS
301: LETFIVDTSN TKTLLEKHGD AIREKGILVV GESGLFNPDD VAYVQNAGVS AVSYPFAFG
101: MGAPRNILEK IIWDKEIEVA QGLARNPLEE VIESAGKAPP TRDFYGALAA AHKRNGVPAL IAEVKKASPS KGVLRENFDP VQIAQAYEKH GAACLSILTD
201: EKYFQGSFEN LQKVRKAGVK CPLLCKEFVV DKWQIYYARA MGADAVLLIA AVLTDLDIKY FLRICKELGL TALIEVHDER EMERVLAING VQLIGINNRS
301: LETFIVDTSN TKTLLEKHGD AIREKGILVV GESGLFNPDD VAYVQNAGVS AVSYPFAFG
001: MEGLVPVQRL PIKVASPSLY RCNNSVSIRR SISGFAMDRK INFRAPSQFS IRAQQSDLKE SLAVSSSSVE DKGNVLRIKE WEVEMYQEEL AISQGIRIRR
101: KPPSKAPLGY SGPFELRLHN NDADSPRNIL EEITWYKDVE VSRMKELNPL DVLKKAVEDA PPTRDFVGAL RMAHKRTGFP GLIAEVKKAS PSRGILKENF
201: DPVEIAQAYE KGGAACLSVL TDQKYFQGGF ENLEAIRSAG VKCPLLCKEF VVDPWQIYYA RTKGADAVLL IAAVLADLEI TFLLKICKKL SLAALVEVHD
301: EREMGRVLGI EGIELVGINN RSLETFEVDI SNTKKLLEGE HGRQIRERDM IVVGESGLFT PDDIAYVQAA GVKAVLVGES IVKQNDPEKG IAGLFGRNIS
401: HT
101: KPPSKAPLGY SGPFELRLHN NDADSPRNIL EEITWYKDVE VSRMKELNPL DVLKKAVEDA PPTRDFVGAL RMAHKRTGFP GLIAEVKKAS PSRGILKENF
201: DPVEIAQAYE KGGAACLSVL TDQKYFQGGF ENLEAIRSAG VKCPLLCKEF VVDPWQIYYA RTKGADAVLL IAAVLADLEI TFLLKICKKL SLAALVEVHD
301: EREMGRVLGI EGIELVGINN RSLETFEVDI SNTKKLLEGE HGRQIRERDM IVVGESGLFT PDDIAYVQAA GVKAVLVGES IVKQNDPEKG IAGLFGRNIS
401: HT
Arabidopsis Description
IGPSIndole-3-glycerol phosphate synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P49572]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.