Factsheet for VIT_12s0057g01240.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0020g03470.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04400.1	VIT_05s0020g03470.t01	AT3G22440.1	15714319

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14867	Soybean	nucleus, plastid	80.72	74.74
KRH73214	Soybean	nucleus, plastid	80.17	74.05
Bra037502.1-P	Field mustard	plastid	72.73	69.11
AT5G48220.1	Thale cress	plastid	71.9	68.87
Solyc03g111850.2.1	Tomato	plastid	76.03	67.15
PGSC0003DMT400039190	Potato	plastid	74.66	65.94
AT2G04400.1	Thale cress	plastid	71.35	64.43
GSMUA_Achr3P04280_001	Banana	plastid	70.52	64.32
TraesCS7A01G512300.1	Wheat	cytosol	58.13	64.13
CDY15081	Canola	plastid	69.15	62.59
Bra013209.1-P	Field mustard	plastid	68.87	62.19
CDY66247	Canola	plastid	68.87	62.19
GSMUA_Achr3P12080_001	Banana	plastid	65.29	60.46
HORVU7Hr1G114660.3	Barley	mitochondrion	58.13	59.77
Zm00001d025652_P005	Maize	mitochondrion, plastid	68.59	59.71
TraesCS2B01G348500.1	Wheat	plastid	67.22	59.66
HORVU2Hr1G081460.2	Barley	plastid	67.49	59.61
TraesCS2D01G329500.1	Wheat	plastid	66.94	58.98
TraesCS2A01G335200.1	Wheat	plastid	66.67	58.6
EES12321	Sorghum	plastid	67.77	58.29
TraesCS5D01G173900.1	Wheat	plastid	58.68	56.5
TraesCS5A01G169500.1	Wheat	plastid	58.68	56.5
EES05044	Sorghum	plastid	58.95	56.32
HORVU5Hr1G052150.3	Barley	plastid	58.4	56.23
TraesCS5B01G166300.1	Wheat	plastid	58.4	56.23
TraesCS7B01G423900.1	Wheat	plastid	58.13	55.82
EES14765	Sorghum	plastid	58.68	55.76
Zm00001d024393_P001	Maize	plastid	58.4	55.35
TraesCS7D01G501700.1	Wheat	plastid	53.72	54.32
Zm00001d020008_P001	Maize	plastid	57.85	53.98
Os09t0255400-02	Rice	plastid	56.75	53.51
OQU89210	Sorghum	plastid	58.68	52.85
CDY00860	Canola	cytosol	13.77	52.63
CDX86321	Canola	plastid	71.63	52.1
CDX85318	Canola	plastid	71.9	50.19
CDY43301	Canola	plastid	39.67	49.48
TraesCS3D01G285000.1	Wheat	cytosol	29.48	44.03
CDX94822	Canola	plastid	20.39	42.53
Os08t0320400-01	Rice	plastid	25.62	40.26
CDY17450	Canola	plastid	39.12	38.38

Protein Annotations

KEGG:00400+4.1.1.48	EntrezGene:100251045	wikigene:100251045	Gene3D:3.20.20.70	MapMan:4.1.5.3.4	InterPro:Aldolase_TIM
ProteinID:CBI28465	ProteinID:CBI28465.3	UniProt:D7TD92	EMBL:FN595759	GO:GO:0003674	GO:GO:0003824
GO:GO:0004425	GO:GO:0006568	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR013785
InterPro:Indole-3-GlycerolPSynthase_CS	InterPro:Indole-3-glycerol_P_synth	EntrezGene:LOC100251045	wikigene:LOC100251045	HAMAP:MF_00134_B	PFAM:PF00218
ScanProsite:PS00614	PANTHER:PTHR22854	PANTHER:PTHR22854:SF10	InterPro:RibuloseP-bd_barrel	SUPFAM:SSF51366	UniParc:UPI0001BE303F
ArrayExpress:VIT_12s0057g01240	EnsemblPlantsGene:VIT_12s0057g01240	EnsemblPlants:VIT_12s0057g01240.t01	unigene:Vvi.6425	RefSeq:XP_002265275	RefSeq:XP_002265275.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr12:-:9995964..10000330

Molecular Weight (calculated)

40219.7 Da

IEP (calculated)

7.831

GRAVY (calculated)

-0.237

Length

363 amino acids

Sequence
(BLAST)

001: MEVQKSKKLS VACVRAQQSE SKDGSATVSP LSDSQENALK IKEWEVGRFQ DEIAATQGIR IRRRPPTGPP LHYVGPFEFR LQNEGNTPRN ILEEIVWNKD
101: KEVSQLKERK PLGMLKKALE NAPPNRDFIA ALRASNLRTG FPGLIAEVKK ASPSRGILRE DFDPVEIARA YEKGGAACLS VLTDEKYFKG SFENLELIRN
201: AGVKCPLLCK EFVVDAWQIY YARTKGADAI LLIAAVLPDL DIRYMTKICK MLGLAALVEV HDEREMDRVL GIEGIELIGI NNRNLATFEV DISNTKKLLE
301: GERGEIIRQK DIIVVGESGL FTPADVAYVQ EAGVKAILVG ESIVKQKDPR SGITGLFGKD ISV

Best Arabidopsis Sequence Match ( AT5G48220.1 )
(BLAST)

001: MEAALLSLQP FPSSATQRRL SPFNLHNTLT RPSSYAPLRA QKSGITEGSD SALEAKVSEQ EVGMYQNEVV ESQGIRIRRR PPTGPPLHYV GPFEFRLQNE
101: GNTPRNILEE IVWHKDKEVA QMKERKPLYS LKKALDNVPP AKDFIGALRS AHQRTGLPGL IAEVKKASPS RGILREDFNP VEIAQAYEKG GAACLSVLTD
201: DKYFKGSYEN LQAIMEAGVK CPLLLKEFIV EAWQIYYGRS KGADAVLLIA SVLPDLDIKY MIKICKILGM ATLVEVHDER EMDRVLAIEG VELIGINNRN
301: LETFEVDLGI TKKLLEGERG ELIRQKDILV VGESGLFTPE DIAFVQEAGV KAVLVGESLI KQSDPGKAIS TLFGRDVSE

Arabidopsis Description

AT5g48220/MIF21_11 [Source:UniProtKB/TrEMBL;Acc:Q9LUB2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.