Factsheet for HORVU2Hr1G081460.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G033190.1
HORVU5Hr1G104870.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04400.1	HORVU3Hr1G033190.1	AT3G22440.1	15714319
AT2G04400.1	HORVU5Hr1G104870.1	AT3G22440.1	15714319

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G329500.1	Wheat	plastid	88.32	88.11
TraesCS2A01G335200.1	Wheat	plastid	87.83	87.41
TraesCS2B01G348500.1	Wheat	plastid	86.37	86.8
Zm00001d025652_P005	Maize	mitochondrion, plastid	71.53	70.5
EES12321	Sorghum	plastid	71.05	69.19
VIT_12s0057g01240.t01	Wine grape	cytosol	59.61	67.49
GSMUA_Achr3P04280_001	Banana	plastid	62.29	64.32
AT5G48220.1	Thale cress	plastid	57.42	62.27
KRH14867	Soybean	nucleus, plastid	59.37	62.24
Bra037502.1-P	Field mustard	plastid	57.42	61.78
KRH73214	Soybean	nucleus, plastid	58.64	61.32
PGSC0003DMT400039190	Potato	plastid	58.64	58.64
Solyc03g111850.2.1	Tomato	plastid	58.64	58.64
HORVU7Hr1G114660.3	Barley	mitochondrion	49.63	57.79
TraesCS3D01G285000.1	Wheat	cytosol	33.58	56.79
HORVU5Hr1G052150.3	Barley	plastid	52.07	56.76
AT2G04400.1	Thale cress	plastid	54.5	55.72
Bra013209.1-P	Field mustard	plastid	53.28	54.48
CDY66247	Canola	plastid	53.28	54.48
CDY15081	Canola	plastid	53.04	54.36
CDY00860	Canola	cytosol	11.19	48.42
CDX86321	Canola	plastid	57.66	47.49
CDX85318	Canola	plastid	57.66	45.58
CDY43301	Canola	plastid	30.17	42.61
CDX94822	Canola	plastid	15.82	37.36
CDY17450	Canola	plastid	29.2	32.43

Protein Annotations

KEGG:00400+4.1.1.48	Gene3D:3.20.20.70	MapMan:4.1.5.3.4	InterPro:Aldolase_TIM	GO:GO:0003674	GO:GO:0003824
GO:GO:0004425	GO:GO:0006568	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	EnsemblPlantsGene:HORVU2Hr1G081460
EnsemblPlants:HORVU2Hr1G081460.2	InterPro:IPR013785	InterPro:Indole-3-GlycerolPSynthase_CS	InterPro:Indole-3-glycerol_P_synth	UniProt:M0XCL3	HAMAP:MF_00134_B
PFAM:PF00218	ScanProsite:PS00614	PANTHER:PTHR22854	PANTHER:PTHR22854:SF10	InterPro:RibuloseP-bd_barrel	SUPFAM:SSF51366
UniParc:UPI000295E525	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr2H:+:590818655..590822628

Molecular Weight (calculated)

44386.5 Da

IEP (calculated)

7.883

GRAVY (calculated)

-0.160

Length

411 amino acids

Sequence
(BLAST)

001: MEALATAPAP SRPGLPPPTR RSHLRRPKTL ATSKLPRRVT AALPMDRAAP LRCTPAETDA AATTSDQAET AAAAVAEATE QGNNGGPAGN APAASIEGLD
101: GIKIRRRPVT GPSVHHVGPF QFRLENEGNT PRNILEKIVW NKDVEIWQMK EKMPLYRLKG PLDNAPPARD FVAALKASYN RTALPALIAE VKKASPSRGV
201: LRENFDPVEI AQAYEKNGAA CLSVLTDSKF FQGSFDYLEA IRNAGVKCPL LCKEFIIDAW QLYYARSKGA DAVLLIAAIL PDRDISYMLK ICKILGMAAL
301: VEVHDEREID RVIGIDGIQL IGINNRNLET FEVDISNTKK LLEGERGQLI AQKDIIVVGE SGLFTPDHVS FVQDAGVKAI LVGESLIKQD DPGKAIAGLF
401: GKDISPMSSA A

Best Arabidopsis Sequence Match ( AT5G48220.1 )
(BLAST)

001: MEAALLSLQP FPSSATQRRL SPFNLHNTLT RPSSYAPLRA QKSGITEGSD SALEAKVSEQ EVGMYQNEVV ESQGIRIRRR PPTGPPLHYV GPFEFRLQNE
101: GNTPRNILEE IVWHKDKEVA QMKERKPLYS LKKALDNVPP AKDFIGALRS AHQRTGLPGL IAEVKKASPS RGILREDFNP VEIAQAYEKG GAACLSVLTD
201: DKYFKGSYEN LQAIMEAGVK CPLLLKEFIV EAWQIYYGRS KGADAVLLIA SVLPDLDIKY MIKICKILGM ATLVEVHDER EMDRVLAIEG VELIGINNRN
301: LETFEVDLGI TKKLLEGERG ELIRQKDILV VGESGLFTPE DIAFVQEAGV KAVLVGESLI KQSDPGKAIS TLFGRDVSE

Arabidopsis Description

AT5g48220/MIF21_11 [Source:UniProtKB/TrEMBL;Acc:Q9LUB2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.