CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG34492

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04400.1	KXG34492	AT3G22440.1	15714319

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d025652_P005	Maize	mitochondrion, plastid	86.73	87.77
TraesCS2B01G348500.1	Wheat	plastid	71.09	73.35
TraesCS2D01G329500.1	Wheat	plastid	71.33	73.06
HORVU2Hr1G081460.2	Barley	plastid	69.19	71.05
TraesCS2A01G335200.1	Wheat	plastid	69.43	70.94
VIT_12s0057g01240.t01	Wine grape	cytosol	58.29	67.77
AT5G48220.1	Thale cress	plastid	58.77	65.44
GSMUA_Achr3P04280_001	Banana	plastid	61.37	65.08
Bra037502.1-P	Field mustard	plastid	58.29	64.4
KRH14867	Soybean	nucleus, plastid	59.24	63.78
KRH73214	Soybean	nucleus, plastid	59.0	63.36
PGSC0003DMT400039190	Potato	plastid	59.48	61.07
Solyc03g111850.2.1	Tomato	plastid	58.53	60.1
AT2G04400.1	Thale cress	plastid	55.69	58.46
EES05044	Sorghum	plastid	50.95	56.58
CDY66247	Canola	plastid	53.79	56.47
Bra013209.1-P	Field mustard	plastid	53.79	56.47
CDY15081	Canola	plastid	53.55	56.36
EES14765	Sorghum	plastid	50.71	56.02
OQU89210	Sorghum	plastid	52.37	54.84
TraesCS3D01G285000.1	Wheat	cytosol	30.81	53.5
CDX86321	Canola	plastid	59.0	49.9
CDY00860	Canola	cytosol	10.9	48.42
CDX85318	Canola	plastid	58.77	47.69
CDY43301	Canola	plastid	29.62	42.96
CDX94822	Canola	plastid	16.82	40.8
CDY17450	Canola	plastid	30.09	34.32

Protein Annotations

KEGG:00400+4.1.1.48	Gene3D:3.20.20.70	MapMan:4.1.5.3.4	EntrezGene:8057502	InterPro:Aldolase_TIM	UniProt:C5YA91
EnsemblPlants:EES12321	ProteinID:EES12321	ProteinID:EES12321.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004425
GO:GO:0006568	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR013785	InterPro:Indole-3-GlycerolPSynthase_CS
InterPro:Indole-3-glycerol_P_synth	HAMAP:MF_00134_B	PFAM:PF00218	ScanProsite:PS00614	PANTHER:PTHR22854	PANTHER:PTHR22854:SF10
InterPro:RibuloseP-bd_barrel	EnsemblPlantsGene:SORBI_3006G112600	SUPFAM:SSF51366	unigene:Sbi.3856	UniParc:UPI0001A87067	RefSeq:XP_002447993.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:48080394..48083520

Molecular Weight (calculated)

45038.0 Da

IEP (calculated)

5.364

GRAVY (calculated)

-0.094

Length

422 amino acids

Sequence
(BLAST)

001: MEALAIGSAP PRPGLAALAR YSHLRRPGTV TGTLVTAARR PVTAASMDAA AGGRPSPAPI RCTSAETDAE VEVDEVATSS HAAGATTDTE QGGNGSPVAG
101: AADSAEVVPG VDGIRIRRRP VTGPAVHYVG PFQFRLENEG NTPRNILEKI IWDKDVEVSQ MKERRPLYML KGPLEAAPPA RDFVGALKAS YDRTGLPALI
201: AEVKKASPSR GVIRENFDPV QIAQAYEKNG AACLSVLTDE KYFQGSFNNL EAIRNAGVQC PLLCKEFIVD AWQLYYARSK GADAVLLIAA VLPDRDIKYM
301: LKICKILGMA ALVEVHDEME MDRVLGIDGV QLIGINNRNL ETFEVDITNT KKLLEGERGQ IIAQKDVIVV GESGLFTPDD ISFVQNAGVK AVLVGESLIK
401: QEDPGKAIAG LFGKDISHAG AT

Best Arabidopsis Sequence Match ( AT5G48220.1 )
(BLAST)

001: MEAALLSLQP FPSSATQRRL SPFNLHNTLT RPSSYAPLRA QKSGITEGSD SALEAKVSEQ EVGMYQNEVV ESQGIRIRRR PPTGPPLHYV GPFEFRLQNE
101: GNTPRNILEE IVWHKDKEVA QMKERKPLYS LKKALDNVPP AKDFIGALRS AHQRTGLPGL IAEVKKASPS RGILREDFNP VEIAQAYEKG GAACLSVLTD
201: DKYFKGSYEN LQAIMEAGVK CPLLLKEFIV EAWQIYYGRS KGADAVLLIA SVLPDLDIKY MIKICKILGM ATLVEVHDER EMDRVLAIEG VELIGINNRN
301: LETFEVDLGI TKKLLEGERG ELIRQKDILV VGESGLFTPE DIAFVQEAGV KAVLVGESLI KQSDPGKAIS TLFGRDVSE

Arabidopsis Description

AT5g48220/MIF21_11 [Source:UniProtKB/TrEMBL;Acc:Q9LUB2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.