CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG34492

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04400.1	KXG34492	AT3G22440.1	15714319

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020008_P001	Maize	plastid	78.91	81.75
TraesCS5D01G173900.1	Wheat	plastid	66.75	71.35
TraesCS5A01G169500.1	Wheat	plastid	66.75	71.35
TraesCS5B01G166300.1	Wheat	plastid	66.25	70.82
HORVU5Hr1G052150.3	Barley	plastid	66.25	70.82
Os09t0255400-02	Rice	plastid	64.02	67.01
EES05044	Sorghum	plastid	59.55	63.16
EES14765	Sorghum	plastid	59.8	63.09
GSMUA_Achr3P12080_001	Banana	plastid	58.06	59.69
VIT_12s0057g01240.t01	Wine grape	cytosol	52.85	58.68
Bra037502.1-P	Field mustard	plastid	50.12	52.88
KRH14867	Soybean	nucleus, plastid	51.36	52.81
Solyc03g111850.2.1	Tomato	plastid	53.6	52.55
KRH73214	Soybean	nucleus, plastid	51.12	52.42
EES12321	Sorghum	plastid	54.84	52.37
AT5G48220.1	Thale cress	plastid	48.64	51.72
PGSC0003DMT400039190	Potato	plastid	52.61	51.58
AT2G04400.1	Thale cress	plastid	49.13	49.25
CDY15081	Canola	plastid	48.88	49.13
Bra013209.1-P	Field mustard	plastid	48.88	49.01
CDY66247	Canola	plastid	48.39	48.51
CDY00860	Canola	cytosol	10.17	43.16
CDX86321	Canola	plastid	50.12	40.48
CDX85318	Canola	plastid	50.37	39.04
CDY43301	Canola	plastid	26.8	37.11
CDX94822	Canola	plastid	14.89	34.48
CDY17450	Canola	plastid	26.05	28.38

Protein Annotations

KEGG:00400+4.1.1.48	Gene3D:3.20.20.70	MapMan:4.1.5.3.4	EntrezGene:8071864	UniProt:A0A1W0W498	InterPro:Aldolase_TIM
GO:GO:0003674	GO:GO:0003824	GO:GO:0004425	GO:GO:0006568	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	InterPro:IPR013785	InterPro:Indole-3-GlycerolPSynthase_CS	InterPro:Indole-3-glycerol_P_synth	HAMAP:MF_00134_B	EnsemblPlants:OQU89210
ProteinID:OQU89210	ProteinID:OQU89210.1	PFAM:PF00218	ScanProsite:PS00614	PANTHER:PTHR22854	PANTHER:PTHR22854:SF14
InterPro:RibuloseP-bd_barrel	EnsemblPlantsGene:SORBI_3002G160600	SUPFAM:SSF51366	UniParc:UPI0001A83C5A	RefSeq:XP_002462143.1	SEG:seg

Description

hypothetical protein

Coordinates

chr2:-:49627550..49630819

Molecular Weight (calculated)

43627.5 Da

IEP (calculated)

8.466

GRAVY (calculated)

-0.025

Length

403 amino acids

Sequence
(BLAST)

001: MESSIAAAAT SVVVRTSVPA VVFMPSLSSS SSSFLSRPAL RTGRRRAFRC SSSSSSVVAK QDSAISSAAA LYCRLDDKLF MSPEVFQWES GKSLNAIASA
101: QGIQIRRRCR ARYPSEGTGA ERAVPRNILE QIIWDKEVEV SQRKARTPLS DVKAAAAAGL APPPRDFLAA MRAARHRNGG GVPALIAEVK KASPSKGLLR
201: DHFDPVEIAQ AYEKNGAACL SILTDEKHFQ GSFENLEAVR NSGVNCPLLC KEFVIDVWQI YYARSKGADA ILLIAAVLPD IDITYFLRVC KSLGMTALVE
301: VHDEKELDRV LKIDGVELIG INNRSLGTFE VDTANTNMLL EKRGDIIKKK RIQVVSESGL FTPDDVAYVQ NAGVFAVLVG ESLVTQEDPG QAIAGLFGKE
401: LLP

Best Arabidopsis Sequence Match ( AT2G04400.1 )
(BLAST)

001: MEGLVPVQRL PIKVASPSLY RCNNSVSIRR SISGFAMDRK INFRAPSQFS IRAQQSDLKE SLAVSSSSVE DKGNVLRIKE WEVEMYQEEL AISQGIRIRR
101: KPPSKAPLGY SGPFELRLHN NDADSPRNIL EEITWYKDVE VSRMKELNPL DVLKKAVEDA PPTRDFVGAL RMAHKRTGFP GLIAEVKKAS PSRGILKENF
201: DPVEIAQAYE KGGAACLSVL TDQKYFQGGF ENLEAIRSAG VKCPLLCKEF VVDPWQIYYA RTKGADAVLL IAAVLADLEI TFLLKICKKL SLAALVEVHD
301: EREMGRVLGI EGIELVGINN RSLETFEVDI SNTKKLLEGE HGRQIRERDM IVVGESGLFT PDDIAYVQAA GVKAVLVGES IVKQNDPEKG IAGLFGRNIS
401: HT

Arabidopsis Description

IGPSIndole-3-glycerol phosphate synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P49572]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.