Factsheet for GSMUA_Achr3P12080_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P12700_001
GSMUA_Achr4P28440_001
GSMUA_Achr7P01520_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04400.1	GSMUA_Achr2P12700_001	AT3G22440.1	15714319
AT2G04400.1	GSMUA_Achr4P28440_001	AT3G22440.1	15714319
AT2G04400.1	GSMUA_Achr7P01520_001	AT3G22440.1	15714319
AT2G04400.1	GSMUA_AchrUn_...	AT3G22440.1	15714319

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G512300.1	Wheat	cytosol	57.14	68.09
VIT_12s0057g01240.t01	Wine grape	cytosol	60.46	65.29
HORVU7Hr1G114660.3	Barley	mitochondrion	57.65	64.02
TraesCS5D01G173900.1	Wheat	plastid	61.22	63.66
TraesCS5B01G166300.1	Wheat	plastid	60.97	63.4
TraesCS5A01G169500.1	Wheat	plastid	60.97	63.4
GSMUA_Achr3P04280_001	Banana	plastid	63.78	62.81
HORVU5Hr1G052150.3	Barley	plastid	60.2	62.6
TraesCS7D01G501700.1	Wheat	plastid	55.87	61.0
TraesCS7B01G423900.1	Wheat	plastid	58.67	60.85
Zm00001d024393_P001	Maize	plastid	58.93	60.31
Os09t0255400-02	Rice	plastid	59.18	60.26
EES05044	Sorghum	plastid	57.91	59.74
KRH14867	Soybean	nucleus, plastid	59.69	59.69
Bra037502.1-P	Field mustard	plastid	57.91	59.42
Zm00001d020008_P001	Maize	plastid	58.93	59.38
AT5G48220.1	Thale cress	plastid	57.4	59.37
EES14765	Sorghum	plastid	57.4	58.9
KRH73214	Soybean	nucleus, plastid	58.93	58.78
OQU89210	Sorghum	plastid	59.69	58.06
Solyc03g111850.2.1	Tomato	plastid	58.93	56.2
PGSC0003DMT400039190	Potato	plastid	58.42	55.72
AT2G04400.1	Thale cress	plastid	55.87	54.48
Bra013209.1-P	Field mustard	plastid	54.85	53.48
CDY66247	Canola	plastid	54.59	53.23
CDY15081	Canola	plastid	54.08	52.87
Os08t0320400-01	Rice	plastid	29.34	49.78
CDY00860	Canola	cytosol	11.99	49.47
CDX86321	Canola	plastid	57.91	45.49
CDX85318	Canola	plastid	57.91	43.65
CDY43301	Canola	plastid	30.36	40.89
CDX94822	Canola	plastid	15.31	34.48
CDY17450	Canola	plastid	30.87	32.7

Protein Annotations

KEGG:00400+4.1.1.48	Gene3D:3.20.20.70	MapMan:4.1.5.3.4	InterPro:Aldolase_TIM	GO:GO:0003674	GO:GO:0003824
GO:GO:0004425	GO:GO:0006568	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr3G12080_001
EnsemblPlants:GSMUA_Achr3P12080_001	EnsemblPlants:GSMUA_Achr3T12080_001	InterPro:IPR013785	InterPro:Indole-3-GlycerolPSynthase_CS	InterPro:Indole-3-glycerol_P_synth	UniProt:M0SDX5
HAMAP:MF_00134_B	PFAM:PF00218	ScanProsite:PS00614	PANTHER:PTHR22854	PANTHER:PTHR22854:SF10	InterPro:RibuloseP-bd_barrel
SUPFAM:SSF51366	UniParc:UPI000296A439	:	:	:	:

Description

Indole-3-glycerol phosphate synthase, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr3G12080_001]

Coordinates

chr3:+:8969751..8977937

Molecular Weight (calculated)

43197.1 Da

IEP (calculated)

7.817

GRAVY (calculated)

-0.262

Length

392 amino acids

Sequence
(BLAST)

001: MEGILAGCSH GVRVLFPVAT SVNPARNLSS KELVPRVLLP GARRSARLRC TRSDEKSTDG RATLTYKGDD FVNSVEVQEW ESGMSLNDIA AKQGIRIRRS
101: HRTGHPSEGS KDEKDTPRNI LEQIIWDKEV EVAQFKQTKP LETLKKAVEG APPVRDFVGA LRESYRRTGV PALIAEVKKA SPSKGVLRED FDPVQIAKTY
201: EKHGAACLSI LTDEKYFQGS FQNLEAVRKA GVECPLLCKE FIIDSWQIYN ARSKGADAVL LIAGVLPDLD IKYMTMICRE LGLAALIEVH DEREMDRVLK
301: IDGIQLIGIN NRNLETFEVD ISNTKKLLEG ERGEIIQQKG IIVVGESGIF TPQDISYVQG AGVRAVLVGE SLIKQVDPGK AISGLFGKDV SK

Best Arabidopsis Sequence Match ( AT5G48220.1 )
(BLAST)

001: MEAALLSLQP FPSSATQRRL SPFNLHNTLT RPSSYAPLRA QKSGITEGSD SALEAKVSEQ EVGMYQNEVV ESQGIRIRRR PPTGPPLHYV GPFEFRLQNE
101: GNTPRNILEE IVWHKDKEVA QMKERKPLYS LKKALDNVPP AKDFIGALRS AHQRTGLPGL IAEVKKASPS RGILREDFNP VEIAQAYEKG GAACLSVLTD
201: DKYFKGSYEN LQAIMEAGVK CPLLLKEFIV EAWQIYYGRS KGADAVLLIA SVLPDLDIKY MIKICKILGM ATLVEVHDER EMDRVLAIEG VELIGINNRN
301: LETFEVDLGI TKKLLEGERG ELIRQKDILV VGESGLFTPE DIAFVQEAGV KAVLVGESLI KQSDPGKAIS TLFGRDVSE

Arabidopsis Description

AT5g48220/MIF21_11 [Source:UniProtKB/TrEMBL;Acc:Q9LUB2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.