Factsheet for Os08t0320400-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 17189339
extracellular: 19038476

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

msms PMID: 19038476 doi

XY Chen, ST Kim, WK Cho, Y Rim, S Kim, SW Kim, KY Kang, ZY Park, JY Kim

Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju 660-701, Republic of Korea.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0794900-01
Os07t0173200-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04400.1	Os03t0794900-01	AT3G22440.1	15714319
AT2G04400.1	Os07t0173200-02	AT3G22440.1	15714319

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G512300.1	Wheat	cytosol	57.58	40.43
Zm00001d024393_P001	Maize	plastid	66.67	40.21
TraesCS7D01G501700.1	Wheat	plastid	61.47	39.55
EES14765	Sorghum	plastid	65.37	39.53
EES05044	Sorghum	plastid	64.5	39.21
HORVU7Hr1G114660.3	Barley	mitochondrion	59.31	38.81
CDY00860	Canola	cytosol	15.58	37.89
TraesCS7B01G423900.1	Wheat	plastid	60.61	37.04
Os09t0255400-02	Rice	plastid	56.71	34.03
CDY43301	Canola	plastid	37.66	29.9
GSMUA_Achr3P12080_001	Banana	plastid	49.78	29.34
VIT_12s0057g01240.t01	Wine grape	cytosol	40.26	25.62
KRH14867	Soybean	nucleus, plastid	41.56	24.49
KRH73214	Soybean	nucleus, plastid	41.56	24.43
AT2G04400.1	Thale cress	plastid	42.42	24.38
AT5G48220.1	Thale cress	plastid	39.83	24.27
Bra037502.1-P	Field mustard	plastid	39.39	23.82
CDY66247	Canola	plastid	41.13	23.63
Bra013209.1-P	Field mustard	plastid	40.69	23.38
CDY15081	Canola	plastid	39.39	22.69
Solyc03g111850.2.1	Tomato	plastid	40.26	22.63
PGSC0003DMT400039190	Potato	plastid	38.96	21.9
CDY17450	Canola	plastid	34.2	21.35
CDX94822	Canola	plastid	14.29	18.97
CDX86321	Canola	plastid	40.69	18.84
CDX85318	Canola	plastid	40.69	18.08

Protein Annotations

KEGG:00400+4.1.1.48	Gene3D:3.20.20.70	MapMan:4.1.5.3.4	UniProt:A0A0P0XEA1	InterPro:Aldolase_TIM	ProteinID:BAT04872.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004425	GO:GO:0006568	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	InterPro:IPR013785	InterPro:Indole-3-GlycerolPSynthase_CS	InterPro:Indole-3-glycerol_P_synth	EnsemblPlantsGene:Os08g0320400	EnsemblPlants:Os08t0320400-01
PFAM:PF00218	ScanProsite:PS00614	PANTHER:PTHR22854	PANTHER:PTHR22854:SF13	InterPro:RibuloseP-bd_barrel	SUPFAM:SSF51366
UniParc:UPI000393AE6E	SEG:seg	:	:	:	:

Description

Similar to Indole-3-glycerol phosphate synthase-like. (Os08t0320400-01)

Coordinates

chr8:+:13954452..13957282

Molecular Weight (calculated)

25156.3 Da

IEP (calculated)

6.295

GRAVY (calculated)

-0.164

Length

231 amino acids

Sequence
(BLAST)

001: MESLLASPSV YRASFPCASS ASRSPSRARL AVTPAGAGAR ARARSLLRCG AKDSILEELA QDDMVNAVEL AQWENGKSIN DIAASQGIRI RRHCRPNVPL
101: KEIEEELGAP RNILEKIIWD KEVEVAEGHA KKPLKEVIEA AGQAPPARDF YGALASAFKR NGMPALIAEV KKASPSRGVL RENFNPVEIA QAYEKNGAAC
201: LSILTDEKYF QVALELDVLM DLELEHVLLL V

Best Arabidopsis Sequence Match ( AT5G48220.1 )
(BLAST)

001: MEAALLSLQP FPSSATQRRL SPFNLHNTLT RPSSYAPLRA QKSGITEGSD SALEAKVSEQ EVGMYQNEVV ESQGIRIRRR PPTGPPLHYV GPFEFRLQNE
101: GNTPRNILEE IVWHKDKEVA QMKERKPLYS LKKALDNVPP AKDFIGALRS AHQRTGLPGL IAEVKKASPS RGILREDFNP VEIAQAYEKG GAACLSVLTD
201: DKYFKGSYEN LQAIMEAGVK CPLLLKEFIV EAWQIYYGRS KGADAVLLIA SVLPDLDIKY MIKICKILGM ATLVEVHDER EMDRVLAIEG VELIGINNRN
301: LETFEVDLGI TKKLLEGERG ELIRQKDILV VGESGLFTPE DIAFVQEAGV KAVLVGESLI KQSDPGKAIS TLFGRDVSE

Arabidopsis Description

AT5g48220/MIF21_11 [Source:UniProtKB/TrEMBL;Acc:Q9LUB2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.