Factsheet for Zm00001d024393_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

plastid: 20089766
extracellular: 20408568
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007835_P002
Zm00001d018911_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04400.1	Zm00001d007835_P002	AT3G22440.1	15714319
AT2G04400.1	Zm00001d018911_P001	AT3G22440.1	15714319

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES14765	Sorghum	plastid	88.77	89.01
TraesCS7A01G512300.1	Wheat	cytosol	71.8	83.59
HORVU7Hr1G114660.3	Barley	mitochondrion	71.54	77.62
TraesCS7B01G423900.1	Wheat	plastid	73.63	74.6
TraesCS7D01G501700.1	Wheat	plastid	69.19	73.82
Os08t0320400-01	Rice	plastid	40.21	66.67
Zm00001d020008_P001	Maize	plastid	63.19	62.21
GSMUA_Achr3P12080_001	Banana	plastid	60.31	58.93
VIT_12s0057g01240.t01	Wine grape	cytosol	55.35	58.4
AT5G48220.1	Thale cress	plastid	52.48	53.03
KRH73214	Soybean	nucleus, plastid	54.31	52.93
Bra037502.1-P	Field mustard	plastid	52.48	52.62
PGSC0003DMT400039190	Potato	plastid	56.4	52.55
KRH14867	Soybean	nucleus, plastid	53.52	52.3
AT2G04400.1	Thale cress	plastid	54.83	52.24
Solyc03g111850.2.1	Tomato	plastid	55.87	52.07
Bra013209.1-P	Field mustard	plastid	54.05	51.49
CDY66247	Canola	plastid	53.79	51.24
Zm00001d025652_P005	Maize	mitochondrion, plastid	55.61	51.08
CDY15081	Canola	plastid	53.26	50.87
CDY00860	Canola	cytosol	11.23	45.26
CDX86321	Canola	plastid	51.7	39.68
CDY43301	Canola	plastid	29.24	38.49
CDX85318	Canola	plastid	51.17	37.69
CDX94822	Canola	plastid	15.93	35.06
CDY17450	Canola	plastid	28.2	29.19

Protein Annotations

KEGG:00400+4.1.1.48	EntrezGene:100272983	Gene3D:3.20.20.70	MapMan:4.1.5.3.4	ProteinID:AQK41106.1	InterPro:Aldolase_TIM
UniProt:B4FS35	EMBL:BT039923	GO:GO:0003674	GO:GO:0003824	GO:GO:0004425	GO:GO:0006568
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR013785	InterPro:Indole-3-GlycerolPSynthase_CS	InterPro:Indole-3-glycerol_P_synth
HAMAP:MF_00134_B	PFAM:PF00218	ScanProsite:PS00614	PANTHER:PTHR22854	PANTHER:PTHR22854:SF13	InterPro:RibuloseP-bd_barrel
SUPFAM:SSF51366	UniParc:UPI00017B7D9D	EnsemblPlantsGene:Zm00001d024393	EnsemblPlants:Zm00001d024393_P001	EnsemblPlants:Zm00001d024393_T001	SEG:seg

Description

Indole-3-glycerol phosphate synthase chloroplastic

Coordinates

chr10:-:68584698..68594686

Molecular Weight (calculated)

41855.5 Da

IEP (calculated)

6.788

GRAVY (calculated)

-0.103

Length

383 amino acids

Sequence
(BLAST)

001: MESLLASRSI RSSFSAVAST RGAASPRPSR VATLASAGAG ARSRALRAGH TDSILEVLAQ DDMLNAKELV QWENGLSFND IAARQGIRIR RHCRPTASLK
101: EIEEELGAPL NILEKIIWDK EIEVAEGHAK KPLEEVIQAA TKAPPSRDFY GALEAAYKRN GVPALIAEVK KASPSRGVLR ENFNPVEIAQ AYEKNGAACL
201: SILTDEKYFQ GSFDNLEKVR SSGVKCPLLC KEFVIDKWQI YNARSKGADA ILLIAAVLPD LDIRKFLQIC EELGMTALIE VHDEREMERV LKINGVKLIG
301: INNRSLETFV VDTSNTKMLL EKHGDIIREK GILVVGESGL FTPDDVAYVQ NAGVSAVLVG ESLVKQECPG RAIVGLFGKE LLH

Best Arabidopsis Sequence Match ( AT2G04400.1 )
(BLAST)

001: MEGLVPVQRL PIKVASPSLY RCNNSVSIRR SISGFAMDRK INFRAPSQFS IRAQQSDLKE SLAVSSSSVE DKGNVLRIKE WEVEMYQEEL AISQGIRIRR
101: KPPSKAPLGY SGPFELRLHN NDADSPRNIL EEITWYKDVE VSRMKELNPL DVLKKAVEDA PPTRDFVGAL RMAHKRTGFP GLIAEVKKAS PSRGILKENF
201: DPVEIAQAYE KGGAACLSVL TDQKYFQGGF ENLEAIRSAG VKCPLLCKEF VVDPWQIYYA RTKGADAVLL IAAVLADLEI TFLLKICKKL SLAALVEVHD
301: EREMGRVLGI EGIELVGINN RSLETFEVDI SNTKKLLEGE HGRQIRERDM IVVGESGLFT PDDIAYVQAA GVKAVLVGES IVKQNDPEKG IAGLFGRNIS
401: HT

Arabidopsis Description

IGPSIndole-3-glycerol phosphate synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P49572]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.